MmuINT1030691 @ mm10
Intron Retention
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80069282-80069707:-
Coord C1 exon
chr10:80069611-80069707
Coord A exon
chr10:80069437-80069610
Coord C2 exon
chr10:80069282-80069436
Length
174 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
GCCCTCTGTCCCCTGTCCAGCCA
3' ss Score
7.39
Exon sequences
Seq C1 exon
TCACACAGCCAGCCTGAGGAGGAAGAAGGGGAGGAAGAGGAGGAGACTGAGGAACTGGGCCATGCTGAGACCTATGCTGACTATGTACCATCTAAGT
Seq A exon
GTAAGTGTCTGGGCCAGGGATGGCACGGAGACACCACTAAGAAGACGGGTGGGTTCATCATCCACAGTGTGGGGCGTCAGGAGCAGGTTGTGTGTGCAGTGGATGAATGGCATCCTGCTGGCCACTCTTCCTTTGTCATGTGCCAAGTCTGCCTGCCCTCTGTCCCCTGTCCAG
Seq C2 exon
CCAAGATTGGAAAGCAACACCCAGACCGTGTGGTTGAGACCAGCACACTGTCCAGTGTTCCACCCCCGGACATCACCTACACCCTAGCGCTACCCACCTCAGACAACAGCACCCTGTCTGCCCTACAGCTGGAAGCCATCACCTATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673:ENSMUST00000219260:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.431
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138721=AAA_34=PU(16.3=92.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGAGGAGGAAGAAGGG
R:
CTGGCAGGCATAGGTGATGG
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types