MmuINT1031948 @ mm10
Intron Retention
Gene
ENSMUSG00000063714 | Sp3os
Description
trans-acting transcription factor 3, opposite strand [Source:MGI Symbol;Acc:MGI:1914936]
Coordinates
chr2:72979424-72987632:+
Coord C1 exon
chr2:72979424-72979595
Coord A exon
chr2:72979596-72987527
Coord C2 exon
chr2:72987528-72987632
Length
7932 bp
Sequences
Splice sites
5' ss Seq
AAGGCAGCC
5' ss Score
-0.18
3' ss Seq
TATGGATGTTTTGTCTGCAGGTA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGGAGGGCGAGGGGAGGAGAAAGCGGCGCGCGGGGAGCCCGGCCGCGCTCAGCCGCTCCTCACCTGGGCCGCCGCCGCCGCCGCGCCGTTTCCGTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTAGATACTCGCCGTGGCCGCCGCCGCCTCCGCCGCCGTCCACGTCCAAG
Seq A exon
GCAGCCATTTCCTCTTGTTTCACGGGCTTTTCGGGAGCTGCAGGCACAGCGCGGGGGGAGGGGGGAGGAGGAGGGTGGGGTGGGGAGGAAGGCGGGTGCGGGGAGGGAGGGGGCCCGCGAGCCGCGGCCACATTAGTGAGCGCCGGGCGGCCCGGGCCCTGCCCCTCCCCTGCCCTCCCCCCGGCCGCGGCGGCCACGGCGGCGGCGGCGCGCTCCCTCCTCCCCTCCTGCTGCCCCCGCCCGCCGCGGCTGTAACCCTCCTCCTCCTCGTTCCCTCCTCCTCCTCCCCGCGCTGCCCCTGCCCCCTCTCCTCTCCTCTCCTCTCCTCCCCTTTCCCTCCGCGGCGCTCGCTCCTCTCGCACCGTCAGTCACTCGCACACGCCCGCCCGCCGCCGCCGCCCGCGCCCGCACACAGGGGGGATGCGCTCCCGGCGGACCGGGCCGCCCGCCCGGAGCCCGGCGGGCACTCGGCGCTGGGGCTGGAAGGGCTGGACAGCTGGCTGGCGGAGATGGGAGTGCGGCTTTCTGCCTCCGCCGACACTCGGTCGCACGCTCCCGGAGGCCGGGAGCCGGCGGTGGCGGCCCCGGGCTGGCTGTGGGCGGCAGTGGCAGCGGCGGAGGCAGCGAGGGTTGCTCTCTCTCGGCTTTACGTACCGGTCATAGTGTGTTTAGGACAGCTCAGGCGGGGCTCCCCGCCGCCTTACACATGGTGAGAAGCGAAGGCGGCGGCGGCGGGAGAGGATGCGGGAAGCGGCGGCGGACACGGCCGGAGCGGTCCGGGGAATTTTTTTTTTCCTATTTTGATTGACTGTGCGGGAAACACAAAAGGTGGAGCCTCCAGCCCAAAAGGGGGGAAGAGGGCGACAGCCCGCCCGGAAGTTCCGCCCCTCTTCCCGGCTCTCATTTGCCGCTAGGCTCTCCGTCAGCTCTGTTCATTGGTCCGGACGCCTGTCCGTCGCTCGGCCTGGCGGCGGGCTTCCTGTTTGCCCCCGGGTTGAAGGGGAGAGACAATGAGCGGCCGTGGCGCCGTAGGTTCTCCAGAACGGCCCCGGCTCGCGCGTTACCCCGCTGTGCCAGCCTCGTTCCTCGGCTGCGGCTGCCAGACCCGAGGCGCAGGCCTCTTCCACTGGCTGGCCCTGTGTGCAGGCCTCGCCAGGCTGTCGGGGAGCCGAGCTGGGGAGGAAGTCCGTCCCCGGTGGCTCCGGCTCCACTCGACGTCTCCTCCATCCTGGCAGCCGACCGGACTGGATCTCCCCAGGGCCCGGGCGCTCGGAGCTGCGTCTTGCCAGCGCTGCCAGGAGGCCACCGCCGCTCGGCCCCAGGGCTGCTGCTGCTACTGAGCAAACCGGACCCGCCCCACGAGCCCTGGGGGAGGGAGCTGGTATTGGGGGAGACACCCCCTCCGAGGCTGGAGGAGGACGTTTTCACACACATTCAGCTCTTGGTCGCAAGTCGGATCCATCACCTTCTCATCCTCCCGAGCTTAGCCCGTGGTTACCAACCATCTACTTTTGTGGACCCTGGAGGCGGGCACTTAGAGCAAAAAGATATCTCCAGTCCCTTCATAAAGAAAAAAGGTTTTAGTTCTGGCCAGTGATATCAAAGCAGGCTTAGTTATGTTTTTATTCAATGAGATACAGTCACCCTTTAAAATCAGTTTGCTGCACACACAAACTACCTGCTTCTTAACCAAGAAAGTCAGTCAACATTTGTTAAAACAGTACATCTAAAAAGTATCCTTCCTCTTGGGAGCGTTTAGTTACTTTTTTTTTTTTTTTTAAATTTTGTACTTAGTGGTGTATTAACACCCCTTCCTTTGACATCCTCAATGCCTTGCAGTCAGTCATTCAGGAGAAAAAAGTGTTCTGCAAACAACAGACAGAACGTTGTCTATTACCTCTAGATACTTTTGCTTAAGAAAGGTTGAATTTAAGAGTAGGAAACACTATCCACAATACTTTTATTAGAAATCTACCTCAAGCAAGAATAAACATCCCAATTATTGTACTTGTATGTTTTGTATGAGGTTGAAGGCAAAGCATTTAAACTAGCTTTGTATACACGAACTTGAAAATTCATGGGGGGGAGGGGCAGTGCATACATCGGTTTCAGAAGCCTTTTTGGACTTGTTTTTTTGTTTTTTGGTTTTTTCTCGTTGGTTGTGGTTTTTGTTTTCAAGACAGTTTCATGTGTAGCCTTGGTTGTCCTGAAACTGGATTTGTAGACCAGGTTCACCTGGAACTCACAGAAACCCACCTGCCTCTGCCTCCTGAGTACTGGGATTAAAAGTGGGGGCCATCTCCGCCAACTACTTCGTGGTAATTTTTAATACAGTGACACATGTTCTCTTTCTCTTGTGTCATGCAAGCAAGAACAGTCTTTCAGGGCCAAAAACCAGATAACTCAAACTAGCTGTTTTGAGGCAAAGCTCTTAAAAATGCACATCAGTGCTGGGCGGTGTTGACACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAAGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAGACAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAATGAACATCAGCAAGAGTATGACTCAGCATAAGGTGAGATTCAGTAGACTTCTCCAACCACAGTTGAGTCACTGTGACACCCTATGTTAAGATGACCAAAAGCAAAATGGTCTCTTGCAAGAATACTTATTTCTTAACTAGTGCAAATACACTAAAGTATATGCAAAGCATAAAGCCGGTATTTAGATAAATACATGTAGTAACATACAGTATAATTTACGGTGGATTAATATGTTTTTGTACAGTCATTAAATGAGAATCAAGTATTATCATGAACAAATCTCGAAACAACAGTAAGATCTGTTTTCCCCTGTCCCCACGACTTGGCCCAGTTTCTTGTTTTCTCTCAAGATTTTCACAAGCTATTCCTGGCCAAGAAACAAAACCAGATCACCCTATTCCCCAGTAGACTAGGACAAAGTTGGTAATAACATCAGCTACAACTCCAAGAGAAGGAAATCAAGCTTAGTCTGTAAGGTACCTCACTGACTAGCTAGAAACGTTATATGGTGTCATGGTCAGCGATTAGTCTACCATATCAAACTAAAATGGAGGTACTATGGGGGGGGGGGGGGGTTTGGGCTCTGAATTTTTTCTTCATCTAATGAGTAGGTTCAGAATATGTAGACCTGTGCTAATTATTAAAGGATATTTTAAAACATACTAAGTTGTGACTATATACGGATATACATAATAACTGTTAGTGTTAGTTTTACTTGTCAATTTAACACAATCTAGAATTACCTGAAAAGACAGTCTTAATGAGGGATTATCTGGATCCGTCTGACCTGTGTCTATGAGGGACTGTCTTCATTAAATTAACTGATATGGAAAGACATAGTCCACTGTGAGTGGCACCGTTTCCTTCATTTATTTGGGTCCTGGACCATATAAGAGCAGAGACAATAGGCTGAGCTGTAAACATGCAAGCATTCAATTCTCTTTTAGTAAGGATTCGATGTGACCTAAAGTCCAATATGACTGAAGTTCCTGCTTCCTTGGGTTCCCTTCTAGAAAGGACTGAAATAAATTTTTCTTCTTTTAAAGTTGTTCTTTGTCAGGGTATTGTATCACTGCAACCAGAAATGATAGCAATACAGAAATTCACTGTAAGTCTTCAAGATGCTAAGTTTTAAACAGTTAAGGACAAAAGTGAGGACCAGCCAGATGGCTTAGCAGATCGGGAGGGCTTGTAGCCAAACCTGACAACACTTCAGTCGCAGGAATCCACATGATGGAGAAACTGTCCCTCAAGTTGTCACCTTACCATGACACGTGCTGTAGTATAAAGCACAAATTCCATAAATGAGGAAAATGAGATTTAAATGGAATTCCTAGGTGTTGTGCTTACATGTCCAAGTTTTAGTTAAGTTAGGCTGAGGGTATCACCATACTTCATATTGTGTTAATATTACGCAATCCTGTTTTAACCTTTTTAAACAAATGAGTACCTGTCGAGACAGTAAAACAAGCATGTCCTGACTGACCAGGAAGAGTCAGTGACTCCATATGACGAAGGCTCCAGCCTTAGCCACTAGAAAATTGGACTGAAATGAGGACTGGGAGCAACTCGGAGACAGTTGAGGCATACAGGTCTGGGTGCCAGAAGATGGACATGGCCTATGGGTGGAAGGATTTGGATGCATGGATAAAACAAGGAGGGGGTCACTGCGCAGACTCGGGAGCCTTTGCCACGTTCTTAGAACTCTGTCCATGAACAAGTTCCTTGGCAAAAAAAAAAATTCTGCCAGGCCTGGTGGCGTACACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGCGGGTTTCTGAGTGTGAGTTCCAGGGCTACACAGCACCCTGACTTTAATTAATAAATAAAAAATTTTTTTAAGTTTAAAAAAATTAAAAACTTTTCCATGTAGGTCAGGCTTGGTATACCTTGTAATCCCAGGACTTGGCAGGTTGAGGCAGGAGAATCTCAAACTCAAAGCATGCTGGGCTACACAGTGAAACTGTCTCAAAATGAGAGGTAACAAGGGCCAGCTGTAATCTCAGTGGTCACGGACTTATCTAGTGTGTCAGCACCTCTGTGTTCACTCCCCACGTAACCCAGTGTATAAACCCTCCACGGGATGGTGCAGGTACCTCCGGGGCTGTTCTGTTTCTTCCTTATGCAAGCTCTCCAGAACTTGCCTTCCTGACACCAGTTTCAACATACAACCCTGAAACACTTCCTCCTGAGAATGCTCTCCTCCCTAAACCTCAGCTGCTTTCTGGTTTTCTCTCAAATGAAGTCTCCATTTTTGCTACACTGTCCAATTTAAAAAAAAAAAAAGAAAAGAAACAAAGAAAAAATATATAGGGCAGTGAAAATGCTTGTTGTCTGTTCCTTACAGCACCCACTAACCACACACAACCATTAGTGCTGGAAACATGACCGAGTGGCTGGGCAATTGAGTTATTTTAATGATTGTAAACTTAAATGACTGCACATGGCCAAGGGCAAATGTATTGGAGAGCACTGCTTTGAGTATCTGCCTGCTTCCAAGCCCTACATATAAATACCTGTCCTTCCCTGGGGAAGCTCAGCCTTCCTGCAACCCCTGGCCATCATTGTAAACTCAGGCCCATGCCTGACCTTTAGTAGTCTGCTGTCTGCTGTTCAGTATCCGTAGGCACCATAAATTCCTCCTAAATGTTTCACTTAGCCTCAAACTGCAAACTCGCAAAATTGAACTCCAGCCTGTCTGACACAGCTCCGCCTTCCCTTTGGACACTCTGTCCCCAACAATGATGCTGTCATTCTCTCAGAAGTCCAGGCAGGAGTCAGGTTTGATACATCTCCCCAGCCTTCCCACTAGCAGAAGCCATGTAGTACTGGCAAGTTTTCCTGCATAATCTCTCTTAATGACTTGTTTGTTACAACCACAAGATTTATTGACCCCTGTTCTGCAAAACACTGCAACGATCTTACCCTCAGCAAATTAAAATGTACACAAATCAAAATCACAGAAATGAAAAATTAAGTCTAAAGCACACAGTGGTTAGAGGACTCACCTAGGGTCCTGCACTCATTTCCCTCTACCACAAAAGATTTTTAAAAACCAAATGTATTGCCATAGAAGGTCTCTCGAGTGTCTCTCAGACCAATGGCTGATGCAGCAAAGCGTGCTTTGCTCCACACCCTTCCCTGTCTCAATGTCTGCCACTCTATTCTTCCTTTTCCGAGCTCCTGCACCTTTGTGGATCCTGTGCAAGGACATCCCTCCTAAACCCTCACTGTCCCACAGTTAACCCCTCTTGTGCCTTGCCAACAGGAGTTCCCATCCTGGACTCTCTGTGTTTCTAGCAACTCAGACAAGAATTTAAGCTCAAAGCAAGCCTTCCCATAAAGCCATCACTTCCAGCTGTAATTCCCTCCTTTTTAGCTTTCCATTGCACTTCTAGGGTACCCTTCAGTGGCTCTTGTAACTCATGATTTACATGATAAAGGCCCTATCTGTATGTAATACGGTCTGAGCCCTCCAAGTTGAAGAAGACAGCTTGCAAGTCCCAGGCCAGGCTGGGCCACAAGTCTACCATTCAACTCATGATATAGAGATGTGAAGTCATGACCTTCAGGTGTGTACCCTTTCTTCAGTGAGCCTCTAGGCTCCACTGCATAGTTCCATACTGTTGGGCAAGATGGCCCTTGTTAAACTTGTCACAAAACAAAAGACATGAACAAGGGAGAGGAACCTATAGGGACAAGGAAGGGGGCAGCCAGCCTGAGAAGACAAGGGAGAGTGTGGGAGGAGAATAATTAGAATAAATTAAATACACTTATGAAATGGTCAAAGAGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTAAGTTCCAGTATCAGCCAGGGCTACACAGAGAAACCCTATCTCGTAAAAAAAAAAAAAAAGAAAGAAAGAAATGGTCAAGGAACAAATTTCATTGAAAAGAAAAATTTTTAGGATACATAAAATGTATAGATACATATAAAATTCCATCTTGGTGTATAGAAATGTTTCAAAACATGCAAAAATTGTAATCATACCATATTAACAAAACCAAACAAAAACAAACTGATAAAATAACTTACAAAGCAATACTTACATATCATCTAATATTAAAATATGTACTATATACAAGTCTTAACACATAATAATTAAATGGCTCTGTCTATGCCTTTAGGCCATCTATAACTCAAGCATTCTGTCATCCATGATGACAAGTGACCTTAATTGTATATTCCTGTGAGTTGTTTTTCTTACTCTATCAAAAGTGTGTTTAATTTCTCTAGTCAATATTTTGCCTTAAAGCTCTGGAATTATTCCTATTATTCTAGTTTATTGATATGCTTTTCCTTCTCCACTCTTTGAATGTTCTGACTTTACACTCCTGTGAGATAATCTTTCTACTTCATATCTCCTCTACCCTGAACTGAATTAAGCCATTTATCTGCTTATGTTCCTGGGCTACTCGACTCATTTCGTTCTTTCTTTGTATTGATGAACCCTCCCTCTAGTTTTGTGTAACAAGCTTACTCCATGTTCCTTCTTCCAAACCATTGGAATAATGAATAAAATTGGTCCTAATATTGATCGCTAGAGCTTCATGGTCCATCCATCCAAACCATTCCACACTTTGATATCAAAATCAATGTTTAATCGACTTAAGTAGTTCATCCCTGTGCCATACTCAGCTGACATTGAGATCTCTGATTGTACGGTGTCATTTCCTGGCACTGTGTCCCAAAGTCTTAAGTCATTGATTGGTTCTTGGCTTCCTCCAATATTATTTATTATTAGATTCAGCAATTATTTCCTAACAATGAGGTAGATAAGATGAATTCATGCAGACTCTCTTTAAATTAAATCATAACTTTCTGATGTTTCCAATTGTTGATTTCCTAAAAAAAAATCCACCAATACCTTCGGTACAGACACTAATCTTAATAATTCTAAATCTTGTACTCAGGGTGGGGAAGAGGGTACTTAGTGAATTTTAATGAGAGTTTTGCCTATTATACATTACACATTATAACTGTCAAAGACATAAGATAAAACATTTCAAGTCCCCTTTTGTCTTTATGGAAGAATCTGAACATCTATTAAGAATCAAGAAGAAAATATTTGAATCACAATAGTGAAAACTCAGGAGCTGTAATCCATAAATGATGTTCTACTATAGATAAATTATACTTGATTTTAAAATGTATTTTAATTTTATGTGTATGGATGTTTTGTCTGCAG
Seq C2 exon
GTATGCCTGCTGCTCATGGAGGGAAGAAGTGAGCTTGTAATCCCTTTGGAGCTAGAGTTACAGATGGCTATGAGTTGCCACAGGGATCCTGGAGATTTGACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063714:ENSMUST00000123087:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types