MmuINT1032397 @ mm10
Intron Retention
Gene
ENSMUSG00000027882 | Stxbp3
Description
syntaxin binding protein 3 [Source:MGI Symbol;Acc:MGI:107362]
Coordinates
chr3:108826006-108827107:-
Coord C1 exon
chr3:108827026-108827107
Coord A exon
chr3:108826083-108827025
Coord C2 exon
chr3:108826006-108826082
Length
943 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTTTTGTTGTTGTTCTCAGTTA
3' ss Score
9.36
Exon sequences
Seq C1 exon
ATAATGCTGTTAGATGAGTTTACCACCAAACTTTTGTCGTCATGCTGCAAAATGACAGACCTTCTAGAGGAGGGCATAACTG
Seq A exon
GTGAGTAGTGCTGCCCTGCAGGTGTGAGATGGGGAAGTAAGCCCAGCATTCTCCAGAAATCCTCATCACGTAGGACCGAGGCTTTGATCTTTATGAATAAAGTGATTTATTTGTTACCTATTGCATACTCAATTTGTATTTGCTATCATAATAGCATGTTTTTAACACAATTTTTTTATTTTTAAGTTTTATCACATTTTATTAGAGAGAGAACGCATGCGTTGCACATGTGAAAGTCACAGAACGACCTTCAGAAGTCAGATCTGTCTGTCTGCTGTGGGGTCCTAGGGGACTGAACTTAGGTCACCAGGCGTGGCCAGTCTTTACTGGCTGAGTCATTTCACTGGCCCCAAGAATCACTAATTAAGCCATGAGGAATCATTTTTCAAGCTTACTTGACAGCAGATAAGATGTTGAAAAGCATTTTAGAGAGCACACAACTCTGCGATGTTCTTGATGTCTCATGTAGTCACCTAGACTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTGTGTGTCCCTGGGTTTGTATTTGCTTGAGTTAGTTCGTCTACTGTGGGGGTCCTGAGCAGCAGGTTTAGGGCATCGGCCTCAGTAGTAGGTTCCTTTACCTGCTGACCCAAGAATGATTGTACTTTTTAACATAGTTCTTTGTTTCTTCCTCACATTTCCATTGCTTATGCTGTATTCTGGCACAGCTACCTATGTAATGACTCCGTTGTTTTTTTTCTCATAATTCTACATAAAGTCTCAGGAGATACATTTTTTTAGGACTTAATAATTTAGCAAATGAGAAAAAAATAAGCCCAATGTATATAAATGTGCTTTTTATTATTATTATAAATGGAAAATACAATAAAGTTTATTTAAAAATATTTTAAACTTTGGTTCCATCAAATGACTTTTTGTTGTTGTTCTCAG
Seq C2 exon
TTATAGAGAATATTTATAAGAATCGTGAACCTGTCAGACAAATGAAAGCTCTTTATTTCATCTCTCCAACACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027882:ENSMUST00000102621:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(43.5=100)
A:
NA
C2:
PF0099518=Sec1=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types