Special

MmuINT1032760 @ mm10

Intron Retention

Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24185204-24190053:-
Coord C1 exon
chr17:24189944-24190053
Coord A exon
chr17:24186202-24189943
Coord C2 exon
chr17:24185204-24186201
Length
3742 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TTTTGTTCCCTTCCTGGCAGCCT
3' ss Score
9.13
Exon sequences
Seq C1 exon
TTGAACTTTCTAGATGCAAGAGAAATCAGAGTGGTGTGAATATTTACCGCAAGTCACTGAAGTGGACCCCTGTGACATTGTTGGACAGTTCTACCATCCAGATCAGAAAG
Seq A exon
GTCAGCTCAATGTATGTGGGTGAATACTGGGCTTGTGTGCCCAGGACAGCAGCCTTTGTGTAAGCTTCAGAACCCAGATCGACGGGCTGTTATAGCTGATGTGCGTGATCTCTTAGTCCTTCTCACCCTTGCCTTTCTCATCCACTGCCCTTTCCTCTTCTTTTCTCCCTTCTCTCTTTTTGTCTTCTTGCCGGAAGCCAAGCATAAGGCCTTATGCATACTAGACAGGCGCTCTCCAGCTGAGCTCCGTTCCAGCACTTGCTTTTTTTTTTTTTAATCTTATGTATATGAGTGTTTTACCTTCATACCTTTCTTGTTTGTTTGTTTTGTTTTGTTTTTTGAGACAGGGCTTTTGTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTCACTTTGTAGCCCAGGCTGTCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGACGTGCGCCACCACCGCCTGGCCCTGCATACCTTTTTTAAGATTTATTTTTATAATAATTTTCTTATTTTTTGAAATTATAATGTAGTTTCATCATTTTCTTCCTCCAAGCCTTCCCCACTTTCTCTCTCAACTTCATGATCTCATTTTCTTTAATTGTTGTCAACACACACACACACACACATACACACACACACACACACACACACACACACACTTAAATATGTAGATATGACCTCTCTGTCCATACGGTGTCACTTGTATGAATATGATTTCAGGACTGATTACTTGGTATTGGATAACCAACTGGAGAGCTCTTTCCTGGGGACAACTATTTCTCCACCTCTCAGCCGTCCTTGGTTGCCTGTGCTTCTCTGTCTAAGACTAAGCTTGATTTTTTGTTTAGACAGGGACTAACTATAGAGCCCTACCTGGCTAAGAACTCACTGTAATAAACCAGGATGGGCCTTAAACTCACAAAGGCATGCAACACCATGCCCTGCAAGGTTTTCATCACCCCCCCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTCTAATTTGATTTTTGAGACAGGGTTCCTCTGTAAAACAGAACTGTCAGTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCGGCCTGTCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTACCACTATGCCTGGCTGTTTTTGTTTTTGTTTTTAATGTATTTTATTTTATATGTAAGGGTATTTGGCCTGCATGTACATTTGTGTACCATGTGTTTGCCTGGTGCCCACAGAGGTCAGAAGAGGACATCAGATCCCCTGCATCTGAAGCTACAGGCTGTTGTGAGAATCCTGACATGTGGGCTTGGAACTGAACTCAGATCCTCCATAAAAACACCCCATGCGCCGGGCGTGGTGGCGCTCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAGAAAAAAAAAAAAAAAACCACCCCATGCTCTTAACTGCTGGGCCTTCTCGACAAAGCCTATTTATCTGTCACTGAGGTCTCACTATGTAACTTAGTCTTGGATTTCCTGTGTAGCCCAGGCAGGGGTTGAACTCATGATCTTTGTGATTCCCCTTCTCCAGAGTTCTGGTGTTTCAAGCATGGTGTGCTATATCCTGCTCACCCACGCCATATGTGTGTCTGGATCACAGTGGCTGCCGGGTAGTGAGATGCTATCATCTCCCCTAAGACTCCTAGCTGTAGTTTAATTGGAACTAAGTGTCTGGTTTTGAAATTTCAGCACCTTCCACTTGTCCCTCAACACGGTTACTACAGAATTCCACCCCAGGCTCTGTCTTACTCTACCAGTGGCTTCCGCTGGAATTACCTGTCGGGAGCTTAGCCTTTAGGCTGCCGGTCGGATGAAGATGAAGCTGATTTAGAACTTCTTCCTCGGGACTGGGGCGTGGCCCGGTGGTACAGTGTTCCATCCAGCATAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAATCCGTCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCCTGCGCCACCATGCCCGGCGGGCTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGCATTTGAACTCGGGACCTTCCGAAGAGCAGTTGGCCCTCTTAACCACTGAGCCATCTCGCCAGCCCCGGATTTTTTTCTTTGTTTTTTTCTGAGGCAGGGTTTTCCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGTCTCTCCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCTCCTGGCTCTTTTAAGTATTTTTAAAGATAATTGCATTTATATTTTTTAAAGATAGAGGTTGGGACTGGAAAGGGCTCAGAGCTTAAGAGCACTGGCTGCTTTTCCAGAGGACTTGGGTTCGATTCTCAGAACCATATGGTGGTTCACAACTGTCTGTAACTCCAGTCCCAGTAGATCTGACACCCTCCTTTGGCTTCTTTGGGTACCATGCATGCAATGGTGCACAGATACATCTGTAGGCAAAACACCCATACAGGTAAATAAAATTAATTTTAAATGTTTTTTAAAAAGATTTTTCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATAGTGACTTACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAGATTTATCATCGGGCATGGTGGTAAATGTCTTTGATCCCAGCACTCAGGAGACAAAGGCAGGCGGATCTCTATAAGTTCCAGGCTAGCCTCGTTTACAAAAAGAGTTCCAGGACAGCCCATGCTACACAAAGAGATCCTGTCTTGAAAAATTAAAAAAGAAAAAGAAAAGACTTATCTCATGATTTTTTGTATCTTGTTGTTTTATGTATGAGTTTGTCTGAATTGCTTATGTGCAGTGCACATAAAGGATGGTGGATCCCTTGGAACTGGAGTTAAGTTTTAAACTTCCTGAACAGGTTACTGGGAATTGGCCTCAGGTCCTCTGGAAGAGCAGTAAGCACTCTTAACCATCCAGCCATCTCTCTGGCCCATGATAGAGTCAGGCTTTCCGAGCATTGCTGGGAGCCTGTCCTCAGCTTCTCATTGCTTGGAACATATGACCTATCTGAGAGCAGATGAACTCTGTGAAGAGAAGTTGTTCTCCAAAGTCAGTGATGACTTCTCAGAGCCATTATTTATCTTTCTAGGCCTTTTTGGAAAAATGAAAAAAACAAAACAAAACCCAAGTCCTTTGAAATGTGTACTTTCAATGCATTCACTAAAATGGTTTTCAATCCTACAGGGTGTGTGGGATGACAGACTGGTTAACAGAAAACCCCCGAAGCTGGGGCTGCAGGATTTAGCTGCTTTTTGTTCCCTTCCTGGCAG
Seq C2 exon
CCTAGGACCTGCCTTGTGGGCACACTGGGCACCATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAGCCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGATGCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGATCCTCCTGTGTATTGCCAACCAGTTCCCTGACATCTCCTTCTGCCCTGCCCTGCCTGCTGTGGTGGCCTTGCTACTGCACTACAGCATCGATGAAGCTGAGTGTTTCGAAAAAGCCTGCCGCATCTTATCCTGCAATGACCCCACCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTTGAGTCTTCCTGTATGACATTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCCCATAAACTGATGGTGGCCGTGTCAGAGGACGTCCTGCAGGTCTACTCTGACTGGCAGCGATGGCTCTTTGGGGAGCTGCCCCTCAATTACTTTGCCCGTGTTTTTGATGTCTTCCTTGTAGAAGGCTACAAAGTATTGTACCGAGTTGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGAATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTATTTTCCCGAAAGGAGATCCAGCTCTTGCAAATGGCCAATGAGAAAGCACTGAGGCAGAAGGGTATAACTGTCAAACAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473:ENSMUST00000168410:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000094989





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000036458, ENSMUSP00000126107, ENSMUSP00000128001, ENSMUSP00000143949, ENSMUSP00000144208, ENSMUSP00000144250, ENSMUSP00000144462, ENSMUSP00000144575
          









    
Other Skipping Isoforms:
ENSMUSP00000127005, ENSMUSP00000128868, ENSMUSP00000143883, ENSMUSP00000144026
  



Associated events







Conservation


Human
(hg38)
chr16:2493707-2496117 
Human
(hg19)
chr16:2543708-2546118 
Rat
(rn6)
chr10:13558297-13560810 
Cow
(bosTau6)
chr25:1997718-1998751 
ALTERNATIVE
BtaINT0001043
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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