MmuINT1033647 @ mm10
Intron Retention
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22346021-22349387:+
Coord C1 exon
chr8:22346021-22346109
Coord A exon
chr8:22346110-22349325
Coord C2 exon
chr8:22349326-22349387
Length
3216 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
GACCTTTTTTTTTTTTCTAGGAA
3' ss Score
11.81
Exon sequences
Seq C1 exon
GGAAATGTTGTTGTTCTCCAAGGAAGTAAATAATTGGATGGCTCAAGATCCTGAAAATGTTGTCGCGATTCACTGTAAGGGAGGAAAAG
Seq A exon
GTAACACCACTTTTTTTCTTTTTCTTTTTTTCTCTTTTTTTTTATTAGGTATTTTCCTCGTTTACATTTCACTTTTTTTCTTTTATTTTCCACTTTGTTAAGAAATTGGAAAGAAATACTGATGTGTGCGAACACAGGCGGTTAATATTAATCATTAACACTTTAAAATACTAGTTTTATTTTTTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAATTTCCCTTCCAAAAATCCCCTCCCCACCTCTCCCCTTCCCCTGCTCTCCAACCCACCCATTCCCATTCCTGGTCCTGGCATTCCTCTATACTGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACCGACCAGGTCATCCTCTGCTACATATATAGCTAGAGCCACAAGTTCCTCCATGTGTTTTCTTTGATTGGTGGTATAGTTCCAAGGAGCTCTGAGGGTACAGGTTAGTTCATATTGATGTTCCTGCTATGAGGCTTTAGTCTCCTTCAGCTCCTTCAGTATTTCTCTGGCTCCTTTATTGGGGACCTTATGCTCCATCCAATGGATGACTGTGAGCATCCACTTCTGTATTTTCCAGGCACTGGCAGAGCCTCACAGGAGACAGCTATATCAGGCTTCTGTCAGCAGGTTCTTGTTGGCATCTGCCTAGTGTCTGCGTTTGGTGGTTGTTTATGGGATGGATCCCCAAGTGGGGCAGTCTCTGGATGGTCATTCCTTCAGGCTCTACTCTGAACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTCCCCCTTCTAAGAAGGAATGAAGTATCCACACTTTGGTCTTCCTTCTTCTTGAGTTTCATGTATTTTGCAAATTGTATCTTGGGTATTCTAAGATACTGGGCTAATATCCACTCATCAGTGAGTGCATATCATGTGTGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATATCCTCCAGATCCACCCATTTGCCTAAGAATTTCATAAATCCATTGCTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTTTCCATTCTTCTGTTGAGGGACATCTGGGTTCTTTGCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATATATCCTTATTACAAGTTGGAACATCTTCTGGGTATATGCCCAAGAGATATTGCTGGATCTTCTGTCCAATTGGAATGTAAATAAAGAAAATATCTTTAAAAAAAAAAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTTATCGTAGCCATTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAAGTGCTTCTCAGCCATTAGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCGGTATCCCATTTTTAATAGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATGTATTGGATATTAGTCCCCTAGTGGATTTAGGATTTGTAAAGATCCTTTCCCAATCTGTTGGTGGCGTTTTTGTCTTATTGACGGTGTCTTTTGCCTTAAAATACTAGTTTCAACACCAAAGGAATGTAAGGAGGAAGAAAAGGGAGACGCAGAGGGGAGGGAAGAACAGGAGAGTGAGGAAGGCAAGAAGGGAAAGGAGTTAAGGAACACTGGGAGTATTTTCCCCTGCCTGCTAAATTGGATTGTTTTGATTTTGAATTGCTAATATAAGTCTGTTAAAATACCAATGGCATTTATCTTTGAAATTGAATAATGCTTTTTATCTCACAGCTATTGTTAATTGGAAGAGATTGTATATATTTATGATATGCATTATATTTTTGTAGCAATATTGTGGAATAGCTAGATCCAACTAATTTACATAATTATCATCCTTATTGTGGTTAATACGCTTTTCCTAGATGACGGGTGACCTTGAACATATTTATATAGCTGTTGGCCTTGTGCATGTTTTCTTTTGGAAATACCTTTTAATGCCCATTTTTCTGCTGTTTCTATTGTTATTGCTGTTATTTGTTTGGAGAGAAGTTTCTTGTTTGTTTGTTTTTTCTTTTCCTTGAAACAAAGTTTCAATAAGAAGCACAGCTGGTCCTTGAACTAGCTAGTATCCCAGGCAAGCCTCCAACTTATGATCCTCTTGTTTCCTTCCAAGTGCTGGGACTGCAGGTGTGACTATCTGGCACTAGGTTCTTTCTACAAAAGAGCTACTTTTCTCATTGAAGTTTTAGACAACATATTCAAATACTGGTTCTCATCCTGCATCGCCCCAGGTCCTCCCATCCCACTGTATGCCTTCTTTCTCTCTCTCTTTAAAAAACAAACAGGCAGACTTTTAAACACCAGGTTTAAAAAAAAAACAATAAAAAGAACAAGAAACACACACACATACACACAAAGCCCTTACAAAATTAGAAAACACAAAACAAAAAACAAAAAACCAAACAATACCAGTAAGATAAAAATGCCCAAATAAAGCCATATGAAACATAAAAAGACAATCAACAGGCACAGCACTGAGTTCATTTTGTGTTAGCCATCTACTGCAGGGCATGGGCCCAGCCTTAAGCATCATTTGCGTACCCACTGAGACACAGAGAAAACATGCTAATTTGTCTTCCTGGCTCTGGGACGCCTCATTCAGAATGATTGTTCCCAGGTTCACTCATTCGGATGAGGAGCCTGGGGCCAGGGGCTCCTCAATTCCTGGACATTCAGACGCCTCTGGGGAGCTGGGAGTTGGGAACGGAGTTGGGTTTCTTGGGCTGAGGAGCCCAGGCAGAGGATGGGGAACTCCAAGTTTAGCTCACCAGCAACTGTCCTTAGCTTAGCAGTAATTGTCTGGGAGCACTGAAGGGCCTTCTGCAGGAGACTTAGAAGGCAGATGGTGTGGCTCTGTAGATGAAGGCTTTCTCCATGGTCCCCACCGTGGTTCTTCACGAGAGAGACCGTCTTTGGTTCCAAACTGTTCATTGATTGGGAACCCCAGCTTCAGCCTCCCTTGTCTTAGGCCTTGAATTCCCATTCTTTAAATGACCTTTTTTTTTTTTCTAG
Seq C2 exon
GAAGAACTGGAACCATGGTGTGTGCCTGCCTCATTGCCAGTGAAATAGTTTTAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481:ENSMUST00000211497:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145661=PTPlike_phytase=FE(20.4=100)
A:
NA
C2:
PF145661=PTPlike_phytase=PD(8.2=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types