MmuINT1035471 @ mm10
Intron Retention
Gene
ENSMUSG00000062101 | Zfp119b
Description
zinc finger protein 119b [Source:MGI Symbol;Acc:MGI:2385323]
Coordinates
chr17:55940929-55941312:-
Coord C1 exon
chr17:55941186-55941312
Coord A exon
chr17:55940990-55941185
Coord C2 exon
chr17:55940929-55940989
Length
196 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATT
5' ss Score
7.27
3' ss Seq
TTTCTGGTACCGTGTTTTAGGCT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GATGCAGTGACCTATGAGGATGTGCATGTAAACTTCTCTCAAGAAGAATGGGCTTTGCTGGATCCTTCTCAGAAGAGTCTCTACAAAGATGTGATGCTGGAAACCTACTGGAACCTTACTTGTATAG
Seq A exon
GTAATTATGTGAATTTTCCTTCATTTTCAACTTAAGGGGACATGACTTTGTTAGAGATGGGTGTTCTTCTGTGATTTTGATTGTGAAAGAGGAAGAATTGGTAAATAAATCAAACATTGTTCTAAAGTTCAATAAGAATAACAAGTTAAATTTTGCATAATTTCTAGTAATATACATTTCTGGTACCGTGTTTTAG
Seq C2 exon
GCTACAAATGGGAAGACCACAATATTGAGGATCAACATCAGAGTTCTGGAAGACATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062101:ENSMUST00000056147:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGACCTATGAGGATGTG
R:
CTTCCATGTCTTCCAGAACTCTGA
Band lengths:
186-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types