Special

MmuINT1035518 @ mm10

Intron Retention

Gene
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20459547-20460160:-
Coord C1 exon
chr9:20459945-20460160
Coord A exon
chr9:20459662-20459944
Coord C2 exon
chr9:20459547-20459661
Length
283 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGTA
5' ss Score
1.14
3' ss Seq
ACAAAATTTTTGCCTTCCAGAAA
3' ss Score
8.12
Exon sequences
Seq C1 exon
ATCGAGAAGGCCGTTCTCGCTCAGAAATCTTGTTCAAACTTCAATTTCATTCTTTGACTGGGCTTTTAACCTCCGCTTCAGAATCAATCGGCATCCAATTCCGGGGAACCGAAATTTCAATTCCGGAAGGACTCGGACACGGTAAACGGAAGTGAACCGCAGCTCGCCTCCGTCTCTTCCGGTGTGGCTTCGTGCGGCCCCCTTCTCTTTTTCTCG
Seq A exon
GTAGTAGCAGGCCGGCTGGGCGGGTTCTGGTGAGGCTAGGTAAGGGGATGGGCGGTGGCGGAGGTGGGGAGTGAGGCCTGGGTGTGGCCTCCATGGCGACTCCGCTGGTTCCCAGGCCGCGAGTCTCGCCCCGTTGCTTCTCAGAGGCTAGGGCCCTGCACTTCTCAGGTCCCGGCCGGGGGCCATTTCATCGGAACGATATTTGAGCTCCCCGTGCCTTCGAATGTAGCCCTTGCTGCCTCGAACGCCTTTAAGGTAATCGTACAAAATTTTTGCCTTCCAG
Seq C2 exon
AAAGAAGGATTTCGGCCGTTGGAATCTGTCTTCGCGCCCCATCGCTCCAGGAACCTGGCCATCCCGCTTCATTGTGAGCAGTGGGTGGAATTTGATGGAGCAGGAAAGTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108:ENSMUST00000159569:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTCTCGCTCAGAAATCT
R:
ACCCACTGCTCACAATGAAGC
Band lengths:
293-576
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types