MmuINT1035545 @ mm10
Intron Retention
Gene
ENSMUSG00000046658 | Zfp316
Description
zinc finger protein 316 [Source:MGI Symbol;Acc:MGI:1860402]
Coordinates
chr5:143265006-143270022:-
Coord C1 exon
chr5:143269851-143270022
Coord A exon
chr5:143265134-143269850
Coord C2 exon
chr5:143265006-143265133
Length
4717 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GTCTCGCCCTTGTCTTACAGAAG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GGGGCCGGCGGGCGGCACTTCCGGTGCCCACGCGCCGCCGCCTCCTCCGCCGTCGCGCAGCTCGCGGCCGTCACTTTGTGTAGTGCGGGGGGGAGTCCCCGGTGGTCACAGCCCCCCACCCCCCACGAGTCCGTGTCTCGCTCCGGCTTGGCCGGGCCCGGGCGCGCGCGCG
Seq A exon
GTGAGTGGGGCGCGCGGATGCGGCAGGTGCGCGCGGGCGGGACGCGCGCGCTGGGGGCGGTGGCGGCGGCAAGGCTGGCCGTCATGGATGCTCGAGAGCTGGAGGCCTCCGGTGTCCGTGGGGAGATCGCGGGACTGCAGGGCCCGTCCTTGGTGGGGTCGGAGTTGCAGCTGCACGAGCTAGATCTTCCAGGCCCCTAGATCCCCCCAATACCGACCTGGGCCTGCGCGGCACGTCAGGGATGGCTTAACACCCTAGAGGGGTACAGACTCCAGCGTGGGAGGGGGCGGGCCGGGGACGTCGTGCACTGCACCTTTGCAGGGTGCTAGCGCCGCCTTCTCCAGCTTAGGGGCGGGAGCTGGGCCGGAGCCGCCCCCGCCCCCTAGAGAGACACCTTCCAAGGAGGGCTGTCATTACTCCCGCCCTAGCGCGAAGTGGAAGCTAGGTACCCTCCCCCCATCCCCCAGAGAGAGGAAGAAAAGGGAAAGACCTTGTCCTGGAGCCCTACAGCCAGCTTTGTGACATTGAGGGGCCGTGGCCTAGCCTGCTTCATCTGTAAATGGAGGCTGGCTGGACTGCTCTCTCTCTCTGCTAAATCTGTTGCCCCCGAGATGGGTGGTGGAACGCGTTGGCAGAATCTAGGGTGCATTATGTGGACACAAGAAGGGAGGGAGGAGGTGCAGGTATCAGCGAGGATCAGCCCACCTGCTCAGCCTGGGTGGGTGGCATTGGCATTTTGTTTTGGTTCTGTCGCTACTGGCTGGGCCAGGGGGCTAGCTGGCCTGGTTGAGGAGCCTGCTCTGGGGGGTCGTGGATGACCTCCAGGGAGCAACCCTGGAGAATAGGGGCTCCGGAAACTGGGCAGATGGTGAGGAGTGTAGTGAACAGGGAAAGACATTCTGGACAAAAAAGGGTCTTAAGTCAGTGGGGCTAGTGAACGGGAATGAAGGTAACTAGCCACAAGTGCGCATGCGCGAGCGTGACCCCACGCAAACATCCTTTACGTGGATCCCCTGGATTTGGGACTTTTCTGGAGTTCCTAACTTTTAACCTTTACGATTGTGTCTCTGCACACTCCTTTCTATGGACAGTGCAGCACCCCGTTCTGAGTGTCTGCAGCGCTGTGCCCTAGGCTCAGGACTTGAGTGGAAAGATGTGTTGAAGTGACACAGTGATTTTTGCCTGATGAAGCCGTGAACTTGACACTGCATTCGAATCCAGGATGAGAGGTTAAGGAGAATGGAGCAGAAAGGCGTTCTAGGGACTGATTGGCAGGAGTGGGGCTAAGAATATCCCAGGAGGAGGGGAACCCCCAGGGCCTGAGTTGCAAGAATATGAACTGACCTTCTCCTGGTCAGACTGGTTTTCAGAGCTTCTGTTCTGAATCTTGGGTCAGAGCACCTGGAGCATCAGGCTTTTCTTGGCTTCTGCCCTGTCTCCCTGTCTTCTCATGGCTTTTTTTGTTTTTTTTTTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCGCCACCACCGCCCAGCTAGAGGCTTTTAATAGGCTTTTTTTTTTTCCTTCACTTTTTCCCTTCTTGCTCTGTCCTGACAAGCAACTCAAGGGAGGAAGTAGTTGCTTGGGCTCCCAGTTGAAAGGTACAGCCCATCACGGTGGGAGAGACACGGAGGCCACGCAGAGAGACTGATGCTGGGGCTCAGCCTGCTCTCTCCTTCTCATTCACACCAGGGCCCCAGCCTAGGGGATGGTGCTGCCCATGTTTAGGGTAGATCTTCCCACCTCAGTTAACCTAATCTAGCCACTCCCTCACAGACATTCCAGAGGCATCTTCTCTTTTGTAACTTCAGATCCTGTCAAGTGTGCAACAGTAACCATCACAGGACGGGTGCACAGACTCAATTTTATCCACTGTCCTCTCTGGTGACAGAGACTCTTCATGACTTCTGGGGTGGGTTTTAGTTTGGTGTACCCTTTCCTCAAGCTGTGGCCAGCCTATTGTGGAGTGTGACAGTTGTGCCCTCACAAATATTTTTTTAAAATTCCAGTATCCATGTCATTAACTGTAGATCTCTGGACATGTCTTTAATAAGTACTGGAGTAGCTACTGTGTGTCTGGGATAGGAATTAGGGGGAAAAATTGGGACTCTTCATCATCCCTCAGTTGAATATTCTTCAGTAAAGAAAATGTGCATGCGGCCTTGGAAGAGATGTAGCCAAGGCGATTGCCTCCTCTTCCTCCTCTTTGTGTGCAACATATGTACACAGTTTTGTGTGTGCATGTGTGCATGCAGGTACATACAGTGTGCATGTAGATAACAGGTCAGCATAGCTGTTGGTCACTCTTCATCCTATTATTTGAGGCAGTGTCTCTTTGAACCCTGAGCTTACCAATTCGGATTGCCTGGCCAGCACTGCCCAGGGCTTGGTTTACAGGTAGATAGCACCATGTTCTGCATCGCCCCCCGCCCCCGTCCCCCTCCCTCCATCTGGAGGATTGAATTCAGGTCTCCATGCTAGTGTGGCAAACACTTGAGTTACCTCCCTAGATCCAGCTTTCATCTTTCCTTGGGCCCTTGCATACAGCAGTCTAAGCTTCAGGATGTCTGAAGTCGCTGGCCAAGGTGGTGACCAGACAGGCATTAGTTCTGTGGGTGTCTGGGCTCAGCATGACTCTATAGCCTTAGGCCTGAGTAAGTCCTTCTCTAGGTCTGAGGTAGGTGGTGGTTGGGAAATCGCTCCCATAGTGTTCTCTGTGTTCTCAGTGCCCCTGGGTACTGGCCAGGACGGCATAAGGCAGGCTTGTGTTCTTACCCTTCAGGAGTCTTCCAGTACCAAAGAGCCCTGGAAGGCGTGGGCGCTTCTCTTAGGCCTAGTTTTGTAGCCTCAATCTTTGAGACAGGTGCTTTTAAATCTATAGTGCTCAGGGAACAAGACAAAGGGGACTTTCGGATGTCAAGAGTCCTAGCCTGTGGGTTTGGGGGCAGGGGTGTGGTGGTTGGTGCCGGTAGGAATGATCAGAGAGTCCTAGCTACTGAGATATGGGGTGGAGTTCATTTCGTTTTGTTTTGATTGCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGAATAATGTGTGTGGAGGCCTGAAGTCAATGGTAGATGTCTTCAATTGCTGTCCACCTTAGGTTTTTTGAGACAGCGTCTATCACTGAGTTGGCCACCTCGGCTGGCTGGCAAATCCCATGGAACCTCCTGTCTCTGTCTTCACGGTACTGGGATTACTGGCATGTACCTCAGGCCTAGCTTTTACATTCTAAAGAATGAACTCAGGTTGTCACACATGGGAAGCAAGCATGTGACTGACTGAGCCACCTCCCCAGTACCAAAGTCTAGATCTTAATTAAAAACAGTGTATGTGCAAGTGTCTTGCCTCCACATATGTCTGTATGTCTGGTGCCCTCAGAGAAGAGGAAAGGGGATGGAATCCCGGACACTGGAGTTAGAGACGGTTGTGAGCCACCATGCGGGTTCTGGGAATTGAACTAAGGTCCTCTAGAAGAGCAGCCAGTGCTCCAAACTGCTGATCCATCTCTCCAGCCCCTAGAGCATAGGTTTTAAAGATGTCTGAACAGAAGGGATGGGTTAGAGGTGAGCCCAGCCTAAGCAGATTGCTCACGTGTGCCCATGGGAATACGAAGCCCAGTGGTCAGACTGTTCTCATGGCCCTGGGCATCTTTACCTGCCACAGTCTGCTTTTAAGCATCCTGAGGCAATGCTGTCTGCTGGGGGTGGCTCCAGTGTCTGCTGTGGCCTGGCATTTCAGGATCTTTTTGGAACTCAGCATGCATGGGTGGCCTGCCTTGCTTTGCAAAATAGTCCTATTGAGATCTGAGATACTTACAGGATAGGTACTGGGTGGCAGGGTGGTGAAAAGAGACATAGGAATGAATTCATGAAAACCCCAGGGGCTGGTGAAATGGCTCAACAGCTAATGGCACCTGCTGTCAAGCTTCATGACCTGAGTCTGACCCCTGAGACCTGTGTGGTAGGGGAGAACTGATTCCTGGGAGTTGTAGTTCAATCTCCACGTTTGGCATGGCATGCATCACTACTCCACAAATTAAACACCAACCACAAAAACATAAAAAAACAAATACAGCTGCCTCACCCTGGAGTGCCACTGGGCTGTTGGTTGTTTTTTTGTTTGTTTGTTTGTTTGTTGTTTTGTTTTGTTTTGTTTTTTGTAGACAAGGAACACTTTAGTGGCTGTAGGACCTCCGCTCCTATCTCATTAAGCCGGTGGCTTTAGGCTCCAGGCCAGGTGCAGCTAGACTGAGTCTGTGGTATCAGTGGGGAAGCAGGACCCTGTAGGCTCCTGAGGTGTTGACATTCATCCATGTTTATTCTCTGATCCTCCAGCGGGAAGGAGTGTCATATCACGTGTCACCATTGCTGGTCTGGTGATGAGCCAGACTCCATCTTTCTGACTGGGAAGGAGTAATGCATGCTCATGGCCCTCCCTGTCTCGCCCTTGTCTTACAG
Seq C2 exon
AAGGGGTTCTGAGAGCTTGTTCCCTCAAAGAGACGAAAACAAGAGCCTTCCCACACCCCGCGAGCCGCATAAGTCCTTGTAGTCGACGGTCCTCCGGCCCGGCCTGGTCCATGTGCACCAAGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046658:ENSMUST00000161448:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types