MmuINT1035576 @ mm10
Intron Retention
Gene
ENSMUSG00000099689 | Zfp383
Description
zinc finger protein 383 [Source:MGI Symbol;Acc:MGI:1920979]
Coordinates
chr7:29908517-29910247:+
Coord C1 exon
chr7:29908517-29908651
Coord A exon
chr7:29908652-29910182
Coord C2 exon
chr7:29910183-29910247
Length
1531 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGACTCATTTTTTCCCCCAGCTC
3' ss Score
9.38
Exon sequences
Seq C1 exon
TTCTTTTGCCTGCGGGACCCTCGTCGTCCGGGGACGGGAAAGTGTACGGCGAGCGGCCTATAGGCCCTTGTTAAGGCTCCAAAGCTGCGGCCCTGGGGTCTGAAGGGAAATACCAGTCAGTATCTGAGATGTCAG
Seq A exon
GTCAGTGGGAGCTGGTCTAGCAGGATGAGCAGCAGTGAGGCTTTGGCTCTGTTTAAGTGTGACCTTAAGTGACTCTAGGACGCAGTGAGTGCGTGGCTGTGATTTTTAGGATTCTTTGGTGGGTGTGTCAATGACCTGTGAACATGCGCAGAGCTGTGTGTGTACGTATGCACGTTTTCTTTATTATATGTGATTAATAACTTTGTGGCAGTGTGTGTGATTGTGTCCCAATGTGTTTGGACCTATTGTGTGTAACGGTATAGCACCTGTGTATGAGGGATATATCAGATAGCCAGTAATTATGCTTCCAAGAGTGTTAATCAGAGGGGGACTGTCTGTATGTTTGTATACTATGTGTATTGGGTACCTGTGACTGTGAGGATGTTTGAGTGTGATTATGTAACTTTATGTGATACCATGAGCATGGTTGGATGTAGCTGATCTTTGTTACTTTGTGGGTTCCTTTATTCACCGACCCTTTATACCCCCCCCCCCCCCCCACACACACACACACAACACCACCCTCCTGCTAGATAGGAGCGAAAGAAAAATAGATGGGGGAGAGAGAGAAAAAGAGAGAGAGATCCTTGACTCTAATTTGTTTCTTCTTTGATCATGACTGCTAACAAACCTTACCATACTCCCTGAACAACCACCAATCCAATCCTGCTTGTCTGGACCCTAGCATTTATGTATCCTCTGAAAAGTCCTCAAAATTTCAAATGCCACACAGTTGCAGAAACTATCTGCCACTGGCAAACCCATACCTATGCTAGAGCACAGGTAAATGAGCTGCTTTGAGGTAGCCCCATATTCCCACACGCACCCCACACGCACCTGGAATTAAAGCAGAGACATACTCTCAGAATATTTCTGTGGGTTTTTTTTTCAATTTTTTTTTATTATTCCTGTGGTTTTTAATGAAACCAAAATTCCAGAATTCTCACTACAATTGGAAGATGGCATGTAATTGTCAAGCTGACAGTATGTGTGTCTTAGGGGCTGTTATGTTCTGTTGAATGTGTATTGTGTATTGATTGTGTAAAATTTCATGAGGGCAACTGGAAGTGATTATAACTGTTGTGTGACTCCGCCGTGAGTCTCCTGTTGTGCCCGTTTGTAGCACTGTGGTTTTATGTGGTGTTGTATTTAAGGGTTCTATAAATGTGGTTGTGATTTCATCCTCAGGATGGATGTGTGACTGTGACTATCCAACCATACATTGTTGTGCTGTCATTTGGGTAGGGTGTGCTTGTGAGGATATATGTGGTTCCATGGTGGGTGACTGACAGCAGCTGTGGGTTTGTAGATTTGGTGTGCCTCTGACTGCCCAAGTGACTCCAATTTTCTGTCCTAAGAGACCCCCAGTGAGATAAGAACAGATTCCAGTATTGGACAACATAGGCTACATTCCTTCTCTGACTCTAGACATTATCATGAGAACCTAGACTTCTCCCTGGGTGACAGGTATGGATCCAGGGTGGCCTTTTATTAAAAGACTTAGGACTTCATGACTCATTTTTTCCCCCAG
Seq C2 exon
CTCCACTCCTCCAGAGGTACCCAGTGGAGAAAAGAGGAATGGCGGTGGACCACGCCAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099689:ENSMUST00000186475:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTTGCCTGCGGGACC
R:
TATTTTTGGCGTGGTCCACCG
Band lengths:
198-1729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types