MmuINT1035798 @ mm10
Intron Retention
Gene
ENSMUSG00000067931 | Zfp948
Description
zinc finger protein 948 [Source:MGI Symbol;Acc:MGI:3040683]
Coordinates
chr17:21569049-21573956:+
Coord C1 exon
chr17:21569049-21569127
Coord A exon
chr17:21569128-21573856
Coord C2 exon
chr17:21573857-21573956
Length
4729 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTACCCCTTACATGAAAGGAC
3' ss Score
3.9
Exon sequences
Seq C1 exon
GGTTCGCTGATCACCCAGACCTGCTTATCTGTGGAAACCTAGAAGGTGGAGAGGGAGAACACAGTAGCTAAGGATCCAG
Seq A exon
GTATGTTGGAGGATTGGTGAAGGGATGGTAAGGGATTCAAGTGAATGTGGAAGTGGGACATGAAATCAGTTTTGCCGCCTTCTGTTTCACTAGAAATAGTTCTGGAGACTTCCACTGACAAAAATCTCTTCAGGATTATCCTATTGTAGAAGTGAGAAGACTTTGTTCAGAAGAACTGATGCTAGGTGGCAATACGATTTTACTTGACTGTGCGTGTGAGTGATGCTGTCCTTATTCCACGCATATCACTGATCTACATACCAATATTAAATGATTTTCATTTCAATGATTTTCATATGTTATAAAATTATAAATTAAGACCTCCAGATGTAATGTTTAATAATTTTTGGATCTTTTATTATTCTAACACCTTCTTTAATTTTTAGTGTCAATTTCACCATTCCTGGAAATAATGCCAACAGAGTTTTGATGAGAATCAGGCACCATATTTGCAGACATGTAAACACAGTCCATCCTGTCTTCCCATGGATATCTCCTATTGTCTGTTGTCATGACAATTCCAAGTGGTTTCCATTGCTGTGATTGTAATATACTGTGAGATCACCTCTAGGTGTGATCCTCTTCGTATTTTCCAGCTCTGTGCTGCTCCTTGGTACTTTCAGGATTACTTTCTGTAAAATATGCAAATAAGATTTTAATAGGAATTACTCGGCATCTCCTCAGTTGTCTTCTCATGTTTGAGAAGCACATGGTCAGTGTGCCTGTTTTCACATGTTTTATGTAGTCTGTTACAGATGTCTGCATTCTAGGTTTTGTGATCTGCACCCATGTTGGTCAAGGACTTTCTATCTAATGGACCATTTGCTAGTACTCTTATTTTGTATATTAATACTTTTGTCTTAATTTTCTGTCACTAGTATAATTATGATCATCAGTCTTTACTGAACTCCAAATTCATAGTATTTAAAAAAGATTCTTTCTCAGTGTTTTGTATCTGTCAATATGAAATGAATTTTTGGTAGAAAACATATTTTTAACCTTAGCTTTCATTTTGTGGAGTTTTTTGGTTGTTACCTTTTTTTCTTTTTTTTCTGAAATGCTGTTTAAATTTTTGGCTTAGAGATTATTATCCATGTACATTTCATTAAATTACTGAAACAAGTGCATTTGTTATTATTTAGGAACTTCTGAGTGGACACTGACAATGCAAAATTGGAACCTCTGTATAGCAAATTTGCATTTTCTTATGACCTGAAATGTAGAGCTTTTTATTATGTACATATTGAACATTTCATCTGCTCTTGAGTATGGTCTGTTCAACTAATTTGCATATTTATTAATTATATTATTGTTTCCTTCCTTTATAATTTTTAATAGGTTTTATATTTCTATCCATTATACTGTAGAAACCTAATATATTTATCTACTGGAGAGTTTGTCTCTTCAAGCTTTATAATTCTCAGTATTACGCTGGATATTTTAATTGTACACAGTACTATTTGTCAGTTCCTGCTCTTGTATCAAGTGTCATTACCTTGTTATTCTGCAGGATTCACTGTTTCAGATCCTACATGAAGGTCTTTGATTCTTTGTATGGTAGGAGAGACTTGGACCCATGTTCATGTTTTTATATGCAGATAGATACTTTTCCCAGTACTACTGTGTGAAGAGGCTGTCTAGTCTGCAACACATGTTTATGATATTTTGGTGACATTCACCTGGTCATTGCTACTGGACAGGTTCTGGATCTGCTGCACTTTTGCATTGATCATTTGGAATCACATTGGAATTGCTCAAGCATTGTACTATTTTCCATTTAGATATTTATGTCATATGTATATGAGTATTTTGCTTGCATCATATCTATTCTAGACCTGGAGTTATGGGCAGTTGGGAACCATGTATTGATCCTAGTTATGGAACTTGGATTTCTACAAAACAGTAAACAGTGAAAGTACTGAGCCATCTCTCTATCCCTATATTAAGTGTAATTTTTGTGCATAGGAATAAGAGAAAATGGTCTAAAGCCTTCTAATCATTTTTATGTGGTATGTACACATTTTTCAATTTAAACATACATTTATTATTTTAAATAATTTTTCCTTTAAATATTGTTGTATGTTTGTGTGGATTCTCAAACATAAAAATACACCCTACTCAATCTGTATGTTTTCAGGGGTGAACATTTGATATTGGATGTTCTATTCTCTGGGAAAGGCTATTTCTCCAACTAATTCTCCACTGAATTCCTTAGTGTTTGACTAGGGTTGAGGCCGAGTGAGTTTTCTCCATTCCATATAGCATGTTTCTTGGTGTTGTCAGCTCATGTTTAGACAATCTCAGAGCCAACATCCTGTTCCTCTGGCCCTTAAAATATCTTCCTTCTTTTTTTTTTCCCCCTATTTTTTTCTTGGATATTTTCCTTATTTACATTTCAAATGTTTTCCCCTTTCCAAGTCTCCCCTTCGGGAACCCCCTATCCTATCCCCCTGCCTCTATGAGGGGGCTCCCCCAACCAACCAACCACTCCTGCCTCACCACCCTGGCATTCCCCTTCACTGGGGCATCGAACACCCTCAGGACCTAGGGTCTCTTACAGTTTTCAGGATATTGGGGTTTTGGCCTATTTGAATGAAATATTTATAATATTTGACAAACTAGACAGACATTTGAAAAGCACAGAATTAAATAAATTATTTTGATTAAAAAAAAAAAACTTCCTTTCCTGCAAACCCTAACTTGCTTTAAACCCTCTTTCTCAGTGACCCCTGAGCTTTAGATGCGGGACTTGTGTTGCTTATGTGTCAGTTGAGACTGAGCATCAGAGCTCTGCAATTTGACTGACTGTAGTTTTCTGTATAATATCCATGTGTTCCAGAAAGAACTTTCCTTGATGAGGGGTCAGGAGTACATTTATATATGGGAATTAGGATAAATATGTAGAATGCTATTTGGAATTATGGTGGTTTTGTAAATTACTGGTTGTAGGTTCTCCTCCTCCTCCAAGATCCATGACTTGATAAGCCCAGGAAATACTGTCTAGGTTTGCAATACCAGGCATGATTTCACTCTTGTTGAGGTCTTAAGGCCAATTAGAAGGTGTTGGTTACCGCCAAGGTATGTATGCCACACTTGCAGCCTTGAGTTATGGTTCAGTGCAGATCATTGTGGTTCATAGCTGTCATAGCTGGGTAGGACTGTTGGTTGGCTCCTTCCTTTGTAAACTTACATGTTGCCTTTTGGTACCACGAGAGCTAGTCCCCAGGGAGGATGCTTTACGTTCAGCTCCATCTTGAATTTCATGGTTTTGCTTCCAAAGTACAGGGCATCTTCAACAAAAGGGACTCACTTTTTACCTCTGGAAGGGAACCAAGGGCAACATCAATAGCATATAATGTTTTAGAAATCTCTTGGACAGCTGAGACCAACAATTTGAAAGCATTCTTCTCATGCTTGGTGTTGGTAGTTTTGTTAGAAAAATCTTTAGCTTTTGTGTATAACATTATCAGCCCAGATAGGAAGTTTTCATTTAAACGCTAAGTGGATATGTCTACACAGACTCCTATGTCTTGTAGGCAGTTTTTTCATAATTGGATAATAATATGACTCCTTATTGCTCTTTCAGACAACCTTATTTTATTTTACCATCTCCCTTCTCTATAATTAAATCCCTGCCCCTGTTTTTCTATTTCCTGATTCAAATCATTTGTTCTCTATTACCACCTATCCATTACTCCCCCTCATCCCACCATGGTCTGTTTTACTTTTCTGGTTACAACAATTGCTCATGTTGTGAACTCATATCTGAAGGTTTGGAGCTAGGAACTTCATTTGAGGGTGAACATTCAATATCTGTCTTTCTGGTTTTGGGTTACTTCACTCAGTGTGATTTTTTTTTTTCTTGGTCCACCCATTTCCCTCTAAAGCTCATTCATGCTTTGAATTTTTATAACAGCTAAATAGTATTCCATATTGTACATGTACTACATTTTCACTATGCACTTGTCAGTTGAAGGTCATTTAGGTTGTTTTGATTTGTAGCCATTGTGAGCCACATGGGTATAGCATGTATCTATGTAGTAGGATGTTGTGTCTTTTGAGCATATTCCAAGGAATGGAAGAACCGTGTCATGTGTTAGATTCATTTAACTTAAGGGTTTGCTTATTTAATTAAGGACTCTCCATATTGATATCCATAGTGGCTACATTTTTTTCTTCATGTGTTTTTATTCCCAATGCTTCTATTGTTTATGTTGTTGCTGGTTGGGTTGTTGGTAGTATTCTTCCTTCTCTGTGGTAATTAGAGGTTGACTGTCTTACCCATGGATGATTACTTCCCAGTTCTCCCATATTTCTCTTCTTCACAGGCAATGTATTATTATTTCTTGTGTTCTCATGGATAATATTTCTATTTTTCCTGTGTAAATCTTGCTTCTAATTTATTATGTACTATGCTGCTTTAGGGAAGTGAATTGTGTTGATTTGTGACTATCTTGAAACTATATTTGTGACTGTGCACTTATCTCTGCATCAATTTAAGGAGACTATTTTTCTGGATGCAACGGTATGGCTGTCGGTGATTTTTCTTTCCAGCCTTCAAATTTTGTTCTATATTCTCCTGGCTTTGGGATCATTGTCAGGATACCTGGTAGTATTATTGTGCTTGGATCTTTTAATGTGGTTTGACATTGTTCATTAATAGGTTTCAGTATTGATTTTTGCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTACCCCTTACATGAAAG
Seq C2 exon
GACTACAAGCTGGCTATTCATCATTCCTGACAGAGAAATTTAAAGAAGAGAAACAAACAAACAAAAAAAAATGGCTGATTCTCCAGTAAACATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067931:ENSMUST00000088787:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types