MmuINT1035872 @ mm10
Intron Retention
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:56810740-56811464:-
Coord C1 exon
chr14:56811334-56811464
Coord A exon
chr14:56810860-56811333
Coord C2 exon
chr14:56810740-56810859
Length
474 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
AAATGTGAATCCCTTTCTAGATT
3' ss Score
7.01
Exon sequences
Seq C1 exon
GCGTCGGGAGCCTCCCACCGAGCCGGGCTTAACAGCCCGCGGCGGCCGGTGTCGCGGCTGCTGCGTCGGGGCCTGAGGGTGCGCTGGGGGCCGCGCTGATGTCCAGGGCGGCTTCGCGTGCGGCCGGAGGG
Seq A exon
GTGAGGGAGCGCGGGCGCGGCAGGGCTGGCTGGGTGAGGCGGCCGCGGGGCGGGGAGCGCGAGAGCCTCCGGGTGCGGGCGGCAGCGGCCGGAGGTCGAAGAGTGTTTTCCTTTCTGTGCTGCGAGCGGGCGGGCGGGTCGGGGAGGGGCCCTTTGGCCCTCCCGCCCGGGGGCCGCACTCCCACCCTGTCTGTTCAACCGACACCCCAAGTTTTCCGTGTTAAGGGGCGTCCTCTTACGTCCCGCGGCGTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTGGGTCGGTCTGTCGCAGCTTTTAATCTTATTTGAGCCAGTTTCTAATGGCTGACCTGGTGCCTGTCGCGGGCTACTGAGGAGTTAGGCCCTAATCAAGTGCTTGCGGCAAATGGGACCCAATTGTTGAACCTCTCCCGGGTCGGATTTGTACTTGAGTGGTAACTACTTAGGAGAAATGTGAATCCCTTTCTAG
Seq C2 exon
ATTCGAGGACGCGTTTACTCTTCGACTCAGCTGCGCGCTCTACTCATAATTCTGAAACTGGAAAGAACATATGAGCTTGGCCTGCTGTCGTTTAGTTGATCTATTGTTTATTTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123:ENSMUST00000173954:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCCGGGCTTAACAG
R:
AACAATAGATCAACTAAACGACAGCA
Band lengths:
222-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types