RnoALTA0000009-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005935 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 [Source:RGD Symbol;Acc:727913]
Coordinates
chr5:146940888-146945880:+
Coord C1 exon
chr5:146940888-146941025
Coord A exon
NA
Coord C2 exon
chr5:146944381-146945880
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGGCCTGACTGCCTGGCAGGTA
3' ss Score
7.25
Exon sequences
Seq C1 exon
GGCCCGGCCTGAAGTCCTGACCTGTACCTCTTGGGGAGCCCCAATTATCTGGGATGAGACCTTCGACCCACACGTAGCTGAGCGAGAGGCGAGACGGCAGAACCTTACCATTGGACTGACTGTCTTTGCGGTAGGCAG
Seq A exon
NA
Seq C2 exon
GTACCTGGAGAAGTACCTGGAGCACTTCCTGGTATCGGCAGAGCAGTACTTCATGGTCGGCCAGAACGTGGTGTATTATGTGTTTACCGACCGACCGGAAGCAGTGCCCCACGTGGCTCTAGGCCAGGGTCGCCTGCTGCGGGTGAAACCAGTGAGAAGAGAGAAGCGCTGGCAGGACGTGTCAATGGCTCGCATGCTCACGCTACACGAGGCTCTGGGAGGGCAGCTGGGCCGAGAAGCTGACTATGTGTTCTGCCTGGACGTGGACCAGTACTTCAGCGGTAACTTCGGACCCGAGGTGCTGGCAGATTTGGTGGCACAGCTGCACGCCTGGCACTTCCGCTGGCCTCGGTGGATGCTGCCCTACGAGAGGGACAAGCGGTCGGCTGCCGCGCTGTCGTTAAGCGAAGGCGATTTCTACTACCACGCCGCGGTGTTCGGGGGCAGTGTGGCGGCTCTGCTCAAGCTGACGGCTCACTGTGCGACTGGCCAACAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005935-3-6,3-5,3-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(15.9=100)
A:
NA
C2:
PF034148=Glyco_transf_6=PD(78.9=99.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGATGAGACCTTCGACC
R:
CACGTCCAGGCAGAACACATA
Band lengths:
356-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]