RnoALTA0000105-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000051782 | AABR07004061.1
Description
NA
Coordinates
chr1:123535289-123538310:-
Coord C1 exon
chr1:123538223-123538310
Coord A exon
NA
Coord C2 exon
chr1:123535289-123535368
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ATGTGTGTATTTGTCAGAAGAAC
3' ss Score
1.28
Exon sequences
Seq C1 exon
CAAGACATTCCTGAAAATATTATGGAAAACGGTGTGGATGATTTACCAGAAGCTTCCAAAATATATGATGCTGTAGAAGAACAAAAAG
Seq A exon
NA
Seq C2 exon
AACTAGGATTAGAAACAGTACTGGATTTAAAACTGGAAAATAAAGACATATGCCATAAGAATGAAGAATACCAAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051782-9-12,9-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGTGGATGATTTACCAGA
R:
TCCAGTTTTAAATCCAGTACTGTTTC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]