RnoALTA0000269-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021575 | AABR07021096.1
Description
complement factor H-related 2 [Source:NCBI gene;Acc:688887]
Coordinates
chr13:56650821-56657866:-
Coord C1 exon
chr13:56657766-56657866
Coord A exon
NA
Coord C2 exon
chr13:56650821-56651015
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TGTTTTATTTTTATGGCAAGTGA
3' ss Score
1.43
Exon sequences
Seq C1 exon
AGATGAAATAAAATTTGAATGTAAAGACGGTTTCTACTCTGCAACCCAGGAAACTGTAGCAAAGTGTACAAGTACTGGATGGATCCCTGCTCCAAAATGTA
Seq A exon
NA
Seq C2 exon
TGAAACCTTGTGAGTTTCCACAGATTAAAAATGGAGGTCTATATCATGAGAGGAGACGAAGACCCTACTTCCCAGTACCTATAGGAAATGAGTACAGCTATTACTGTGACAATGGGTTTTTGACACCTTCTCTGTCATACTGGGACTACCTTCGTTGCACAGAAAAAGGGTGGGAGCCTGAAGTCCCGTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021575-11-10,11-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.1)
A:
NA
C2:
PF0008415=Sushi=PU(95.4=91.2),PF0008415=Sushi=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000060160fB46
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGATCCCTGCTCCAAA
R:
ACTGGGAAGTAGGGTCTTCGT
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]