RnoALTA0000477-1/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061099 | AABR07033324.1
Description
NA
Coordinates
chr11:17336426-17340001:-
Coord C1 exon
chr11:17339387-17340001
Coord A exon
NA
Coord C2 exon
chr11:17336426-17336526
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGGAATT
5' ss Score
1.23
3' ss Seq
TGCTGGTGGCATGCCTGGAGGAA
3' ss Score
-6.43
Exon sequences
Seq C1 exon
TTCTGACAAAAATGAAGGAAATTGCAGAAGTTTACCTTAGAAATACTGTTACCAATGCCGTGGTCACGGTGCCAGCTTACTTCAACGACTCTCAGCGACAGGCAACAAAAGATGCTGGAACTATTGCTGGCCTCAACGTACTTCGAATTATCAATGAGCCAACTGCTGCTGCTATTGCCTATGGCTTAGATAAGAAGGTCGGGGCTGAAAGGAATGTGCTGATTTTTGACTTGGGAGGTGCCACTATTGATGTGTCAATCCTCACTATTGAGGATGGAATTTTTGAAGTCAAATCAACAGCTGGAGACACCCACTTGGGTTTAAAAGACTTTGACAACCAAATGGTCAACCATTTCATTGCTGAGTTTAAGCGAAAGCACAAGAAGGACATCAGTGAGAACAAGAGAGCTGTCAGGCGTCTCCGCACTGCCTGTGAGCGGGTCAAGTGCACCCTCTCCTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTCTATGAG
Seq A exon
NA
Seq C2 exon
GAATGCCTGGTGGCTTCCCTGGTGGAGGAGCTCCTCCATCTGGTGGTGCTTCTTCAGGCCCCACCATTGAAGAGGTCGATTAAGTCAAAGTAGAGGGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061099-1-12,1-11,1-10,1-9,1-8,1-7,1-6-1/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(38.3=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGAGAGCTGTCAGGCG
R:
CAATGGTGGGGCCTGAAGAAG
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]