RnoALTA0000732-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57571981-57584422:-
Coord C1 exon
chr3:57584331-57584422
Coord A exon
NA
Coord C2 exon
chr3:57571981-57572093
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AGAGACTTTTGTCTCATCAGAAC
3' ss Score
4.85
Exon sequences
Seq C1 exon
GGATCACATGCAGTGGTCCAAAGAGGAAGAAGACGAAGCTAGAAAAAAAGTAGAGGAAAACTCAGCCACACGAGTCGCCCCAGAAGAGCAAG
Seq A exon
NA
Seq C2 exon
AACCTGGGAGCAGAGAAAGGTCTGCTTCTAACCCTGACTTGGAAGAATACAGCAGAGGACCCAGGAAGGCAGAGCAGTTTCCTGGTAGCAAGGCTACTTTTCGAATACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382-11-6,11-5,11-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=NA C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0196912=DUF111=PU(27.6=42.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCAGTGGTCCAAAGAGG
R:
AGTATTCGAAAAGTAGCCTTGCT
Band lengths:
196-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]