RnoALTA0001424-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:190063418-190064150:+
Coord C1 exon
chr1:190063418-190063588
Coord A exon
NA
Coord C2 exon
chr1:190063960-190064150
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GTTTGTTGTGTCTTTTCTAGCAT
3' ss Score
9.98
Exon sequences
Seq C1 exon
TGGAGGAAACAAACGTAGGCTGAGCACCGCGATTGCCATAATGGGAAACTCCTCAGTTGTCTTCCTAGATGAGCCGTCTACTGGCATGGACCCACTAGCCCGGCGCATGCTCTGGAACGCAGTGATAAGGACGAGAGAGAGTGGCAAGGTCATCATCATCACCTCTCACAG
Seq A exon
NA
Seq C2 exon
CATGGAAGAATGTGAAGCGCTCTGTACCAGGCTAGCCATCATGGTGCAGGGAAAGCTGGTGTGCCTGGGCAGCCCTCAGCATCTCAAGAACAAATTTGGCAATATTTACACCATGAACATCAAGTTCAAAACTGGCACCGATGACGACGTGGTGCAGGATTTAAAAAATTACATCGCCGAGGTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296-39-39,39-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACGAGAGAGAGTGGCAA
R:
AGCTTTCCCTGCACCATGATG
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]