RnoALTA0001525-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98466450-98469799:-
Coord C1 exon
chr10:98469704-98469799
Coord A exon
chr10:98466505-98466593
Coord C2 exon
chr10:98466450-98466504
Length
89 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGG
5' ss Score
7.13
3' ss Seq
ATCCTCCAATTTGCATCAAGTTC
3' ss Score
2.08
Exon sequences
Seq C1 exon
ATGAGGAAGAGACGCTTGAGACTGGGTCAGCAAATGTGGGCTCTTCTCTGCAAGAACTGGCTCAGGAAGTTCAGGATGAGAAGAGAGACGCTCCTG
Seq A exon
TTCACGACGCTCCTGAAATGTCTATGATGGATCTGGGACGTGTTGATGACTTTAACGATTCTAATTATATTATTGTGTTTGCTCCTGAG
Seq C2 exon
TCTGAAACCACCCATGAGATAATGAACATAGCGGCCTTAGCTCCATTCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-0-3,0-2,0-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAAGAGACGCTTGAGACT
R:
CTTTCATGAATGGAGCTAAGGCC
Band lengths:
151-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]