RnoALTA0002194-2/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142775192-142776840:+
Coord C1 exon
chr7:142775192-142775292
Coord A exon
chr7:142776739-142776772
Coord C2 exon
chr7:142776773-142776840
Length
34 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGT
5' ss Score
4.58
3' ss Seq
ACAGCTATCACAGTTTGCAGATC
3' ss Score
-0.08
Exon sequences
Seq C1 exon
GACTGTCATCTCCCAGAGTCACGTCTCTCACCAGCGTCCGTCAAACTTCTGGAAGAGTGAAACCCCAGGCAACTCTTCGAGGTCAAACACTCAGTGTCTAA
Seq A exon
ATCTCGTCACATCTCTTCTCCTCCTATCTCCAAG
Seq C2 exon
GACCATGACCCTGGGGATTTTCCGAAGGGTCTTTTTGATGCTGTCGGTGGCCTTGGGCCTAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713-3-7,3-6,3-5,3-4,3-3,3-2,3-1-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAGTCACGTCTCTCAC
R:
CGGAAAATCCCCAGGGTCATG
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]