RnoALTA0002384-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5647725-5649069:+
Coord C1 exon
chr3:5647725-5647851
Coord A exon
chr3:5648856-5648957
Coord C2 exon
chr3:5648958-5649069
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGGCTTCGCTCCTGAGGCAGGTG
3' ss Score
1.95
Exon sequences
Seq C1 exon
GAGTCATGTCTGCCTATGCCATGTGCGTTCGCTACGATGGCGTTGAAGTGGATGACAGCTACTGCGATGCCCTGACCCGTCCTGAGCCCGTCCATGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
Seq A exon
GTGGGAGACCAGCAGCTGGAGTGAGTGCTCACGCACCTGCGGTGAGGGCCATCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTGTCTCCTGGCTTTGACAG
Seq C2 exon
CTCCGTGTACAGTGACCTCTGTGAAGCCACAGAGGCTGTGCGGCCGGAGGAACGCAAGACATGCCGCAACCCAGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-21-24,21-23,21-22-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATGTCTGCCTATGCCA
R:
TCCGACCACTCAGACATCTCC
Band lengths:
238-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]