RnoALTA0002394-1/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197806657-197807267:-
Coord C1 exon
chr2:197807063-197807267
Coord A exon
NA
Coord C2 exon
chr2:197806657-197806833
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCGGGTCTCTCATCCTTCAGTGC
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTGGGAGGCTGGCGAGTGGACGTCCTGCAGCCGCTCCTGTGGCCCTGGCACCCAGCATCGCCAGCTGCTCTGCAGACAGGAATTCGGAGGCGGTGGCTCCTCAGTGCCTCCAGAGCGTTGCGGACATCTCCCCCGGCCCAACATCACCCAGTCCTGTCAGCTGCGCCTTTGTGGCCACTGGGAGATTAGCTCCCCCTGGAGCCAG
Seq A exon
NA
Seq C2 exon
TGCTCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGGCAAGTGCGGTGTGTTGGAAGTAATGGCCATGAGGTGGGCAAGCAGGAGTGTGCTTCCGGGCCCCCGCCACCTCCCAGCAGAGAGGCCTGTGACATGGGCCCCTGTACCACAGCCTGGTTCTACAGTGACTGGAGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385-17-29,17-28,17-27,17-26,17-25-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=81.2),PF0009014=TSP_1=PU(12.7=10.1)
A:
NA
C2:
PF0009014=TSP_1=PD(83.6=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATCACCCAGTCCTGTC
R:
CCACCTCATGGCCATTACTTCC
Band lengths:
141-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]