RnoALTA0002651-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86106154-86106372:+
Coord C1 exon
chr14:86106154-86106234
Coord A exon
NA
Coord C2 exon
chr14:86106319-86106372
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
CCTCCCTTTGTTGTTAGCAGGAC
3' ss Score
7.63
Exon sequences
Seq C1 exon
AGAAGCCCAAAAAGGAGGGCAGTAGCCCCAAGGAGGACACAGAAGACAAGTGGGCGGCAGAGAAAAACAAGGACCACAAAG
Seq A exon
NA
Seq C2 exon
GACCCCGGAAGGGCGAGGAGCTGGAGGAGGAGTGGGGTCCAGTGGAGAAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720-13-10,13-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGGAGGACACAGAAGA
R:
TTTTCTCCACTGGACCCCACT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]