RnoALTA0004640-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2130807-2131262:-
Coord C1 exon
chr3:2131080-2131262
Coord A exon
NA
Coord C2 exon
chr3:2130807-2130980
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
GCCCAGTCTTTCCTCAGAAGGTG
3' ss Score
2.22
Exon sequences
Seq C1 exon
CAACCCAATGTGGCCTCTACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACCGGCAGTGTGGTTCTCACAGCTAGCACGGACCTTCGTGGCTATGTGGTAGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCGGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAG
Seq A exon
NA
Seq C2 exon
GTGTCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGCACAGGTGTCAAGGCCTGGAGGCATGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCCCAGTCAGCCCTGCCTGGCTGCAGCCTTATCCACATCGACTATTACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622-10-13,10-12,10-11-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTGACATTGAGAACCA
R:
CCGCACATCATAGATCCAGCG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]