RnoALTA0005213-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88914276-88916697:+
Coord C1 exon
chr10:88914276-88914371
Coord A exon
NA
Coord C2 exon
chr10:88916598-88916697
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CGCCTTGTCTCTCGCCTCAGATT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GAGCCTTGCTTGCGTACGCTGGTCCGCGACTCTGCTCAGCCTGAGCCGGGGGCTTTGCTGCGGCGGCTGCGGTCGCGGCGGCGGAGCGGGCGAGAG
Seq A exon
NA
Seq C2 exon
ATTGGAGTGAACAACCATCGCCACCATGGGGGAGCTTTTCCGAAGCGAGGAGATGACCCTGGCCCAGCTCTTTCTCCAGTCCGAAGCTGCTTATTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0149614=V_ATPase_I=PU(17.3=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTTGCGTACGCTGGTC
R:
GGCGATGGTTGTTCACTCCAA
Band lengths:
114-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]