RnoALTA0005226-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37368392-37370102:-
Coord C1 exon
chr12:37369931-37370102
Coord A exon
chr12:37368422-37368426
Coord C2 exon
chr12:37368392-37368421
Length
5 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTTCATTTTTCTTCTTCTAGGGT
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGCTCTCGGATGTGCTGTGGGCCATGCTGATGCGTGTAGGCCTGCGTGTGGACAACACTTACGGGGTCCTGCTGCTGCTGCCCGTCATGACTTTCTTTGCAGTTCTGACCGTTTTTATCCTTCTGGTCATGGAAGGGCTTTCTGCATTTCTCCACGCCATCCGGCTTCACTG
Seq A exon
GGTAG
Seq C2 exon
AATTTCAGAACAAATTCTACGTTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-55-53,55-52-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(13.1=96.6)
A:
NA
C2:
PF0149614=V_ATPase_I=PD(2.6=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCAGTTCTGACCGTTT
R:
TGCACCAACGTAGAATTTGTTCTG
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]