RnoALTA0005633-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2544500-2545432:+
Coord C1 exon
chr7:2544500-2545161
Coord A exon
chr7:2545239-2545275
Coord C2 exon
chr7:2545276-2545432
Length
37 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GAGGCTGTAGCCTGAAGTAGGAA
3' ss Score
-5.59
Exon sequences
Seq C1 exon
CTCTGCAGCCTCAGCACCTTAAGTCCACCATTAGAGAACATGATTCAGAACAAGCCCAGTCTCAAGCTCACCCAAGAGCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCCTCAGCCTCAGCCTCAGACTCCTATCCAGCCTCATCTTCAGTCAAGTAACGGGTTCCTAGAACCGGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCACGACCTCAGCCAGTCTGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCTGATAGCAGCCCCGGAAAATTAGACTCTGCTCCATCTCAGTCCTTAGAGGAGCCAGAGCCTGATGAGACACAACCCTGCCCTGGTCCTCAAGGTCCGTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTGTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCCTGCCTCCTCTAAACCA
Seq A exon
GAAAGATGTAAACTCCTTCATGTCTTCTGATTTGTAG
Seq C2 exon
ATGAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGAGGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGACAACCAAAACGGAGAGGGAGACCTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-27-39,27-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCTGCTCCTACACCAC
R:
GGAGAACAAGGATTGGCAGCA
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]