RnoALTA0006115-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3418546-3419486:-
Coord C1 exon
chr14:3419425-3419486
Coord A exon
chr14:3418664-3418720
Coord C2 exon
chr14:3418546-3418663
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GATAACTTGATCTTTTCTAGCAG
3' ss Score
5.68
Exon sequences
Seq C1 exon
AAATATCTCCTAAATTTACTGGAGTAAAACAGAATGATTTGCCTTCAAAAGAAAATACAAAG
Seq A exon
CAGATACAGTGTTCTGTGCCCGACATAACCTCTGCTGAAACTGCCCTTGTTCAGCAG
Seq C2 exon
AGCACAGGGCCATGTGGAGCTCCAGGGAAGCCTCCCCAGCAGATGCCTGGTTGCCAAGTGCCACACCATCTTCAGGCCACAGAGAGCACTGCGTCTGTGCAGACTCAGCCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-18-21,18-20,18-19,18-18-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGTAAAACAGAATGATTTGCC
R:
TGCTCTCTGTGGCCTGAAGAT
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]