RnoALTA0006561-5/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140321941-140322436:+
Coord C1 exon
chr7:140321941-140322050
Coord A exon
chr7:140322285-140322422
Coord C2 exon
chr7:140322423-140322436
Length
138 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
GAGCTGCTCCCCTTCCTCAGCTG
3' ss Score
6.49
Exon sequences
Seq C1 exon
GATCTCCATCACCCGCGTCACGGCTGACCTCTCACTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATCATCGAGCGCTCTTCTGCCCGCTCCAGCATTG
Seq A exon
CTGAGGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAGCTAGCCAAGACCTCACTGGCCCCCATCATCGTCTTCGTCAAAG
Seq C2 exon
TGTCCTCGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274-19-28,19-27,19-26,19-25,19-24,19-23-5/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]