RnoALTA0006772-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17746930-17747115:+
Coord C1 exon
chr9:17746930-17746969
Coord A exon
chr9:17747050-17747052
Coord C2 exon
chr9:17747053-17747115
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CCCTCCATCCTTCTCCCCAGGAG
3' ss Score
10.63
Exon sequences
Seq C1 exon
GTTGCTGGATGAAGTCAACATGCTTGAGCAACTCCAAGAG
Seq A exon
GAG
Seq C2 exon
ACCATCACTGATGCAGATTTGGACCAGAATTCTGTAGAGTTGTTTGAGACGTTGGCAAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-16-22,16-21,16-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGATGAAGTCAACATGCT
R:
CGGTTTGCCAACGTCTCAAAC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]