RnoALTA0007866-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123731539-123732836:+
Coord C1 exon
chr3:123731539-123731971
Coord A exon
chr3:123732715-123732718
Coord C2 exon
chr3:123732719-123732836
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCCTCTTTCTCCTTTCCTAGCGA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTTATTTTTCGAATATATAAGGAGGTGGAGGTGGCAGCTGCCCAGCTCGCGTCTTCCCCTCCCTTCCTCCCCACATCCCTCTCCTCACTCCCAGGCCCACTGCTCTTCCTCCCTCCCTCCCCTCCCTCCTTCCCCTTACCCCAGGCTCACTCTCGGAGCCTAGCCATCTGGGTCGGCGTCTGCTGGCCGCTGTACTTGTGGCCCTCTAGCTAGCCTTTGCCCGCCCCGCCACCATGGAGGTACCCCCGCAGAAGTCTGCGCCGGGCTCAGCTCTCAGTACTGCCCGCGTGCTGGGTGGCATTCAGCGGCCGCGCCACCTCTCAGGCTTTGGGTTTGGGTCTGATGGCTTGCTGGGGTCTCCAGAGCGTGCGGCTTCCTCCTCTCCGGTTACCACTCTTACCCAGACCATGTACAACCTCGCAGGGCTCGGCAG
Seq A exon
CGAG
Seq C2 exon
ACCCCAAAAACTCAAGTAGGAAGCCTGTCGTTCCAGAACAGGCTGACAGACCTGTCCCTGTCCAGACGTACCTCTGAGTGCTCCCTGTCATCTGAGTCCTCAGAATCTTCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=NA C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCCTCTCCGGTTACCAC
R:
TGGAACGACAGGCTTCCTACT
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]