RnoALTA0007872-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27549573-27550047:-
Coord C1 exon
chr18:27549950-27550047
Coord A exon
chr18:27549795-27549798
Coord C2 exon
chr18:27549573-27549794
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTGGAGTGTTCTTCTCCTAGATA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ATCCGTTTCTTCTGGTCAAGAACGTGAAGGTGGGTGGTCCGGATCAAGCCAGTCTTCTCTGCATTCCACCTTTGAAGTCCTGAGCTTGCCGGAAGTCT
Seq A exon
ATAG
Seq C2 exon
CTCCACCTCGCTCGGTGAAGACGCTGAGGTCATGTCTACAGTACCTTTCCCAGCTGCAAGTGAAGAGGGGAGTTATGTCTCAGCACCCAGTTTTAGGTTCAAACAAAGGAAGATGTTACACCTACTTTTGGAGAGACACGCTTCTTTTACCGTTGGTTCAGATTTCCCCGAATCTCCGGGTGACAAACTCCATGACTCGGCAAACCTAAGCCTTCTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.328
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGATCAAGCCAGTCTTCT
R:
CATGACCTCAGCGTCTTCACC
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]