RnoALTA0007923-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135764001-135766058:-
Coord C1 exon
chr6:135765979-135766058
Coord A exon
NA
Coord C2 exon
chr6:135764001-135764051
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTCCTGTCTGTTACACCAAGGAC
3' ss Score
3.68
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATCCTATCTTTGAGTACTTCAACACTGCTCCTCTTGCACATGACCTGACTTTTAGA
Seq A exon
NA
Seq C2 exon
GACTCGCTCTCCTCCTCATCTGCATCTTCTCTGCTAGCCTTGTGGGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-39-38,39-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080623fB2731
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAACTTCCAGATTTCCAGGA
R:
TCCCACAAGGCTAGCAGAGAA
Band lengths:
126-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]