RnoALTA0008506-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196487656-196492566:+
Coord C1 exon
chr2:196487656-196487749
Coord A exon
chr2:196492393-196492402
Coord C2 exon
chr2:196492403-196492566
Length
10 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CTTTTCCCTTCCACACTTAGGAT
3' ss Score
10.58
Exon sequences
Seq C1 exon
AGGACCCGGCCCAGTCAGTGCGCACTGGCCGGGCGCTAGAAGTGGGACACGGAGCAGCGGCGCCCGGACCGGTCAGCTTTGCACTGGCCGCCGA
Seq A exon
GATGCTCCAG
Seq C2 exon
ACCTTGTATGACTACTTCTGGTGGGAACGACTATGGCTGCCTGTGAACTTAACCTGGGCTGATCTAGAAGACAAAGATGGACGTGTCTATGCCAAAGCCTCAGACCTCTACATCACACTACCCCTGGCCCTGCTCTTTCTCATCATTCGATACTTCTTTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCTAGAAGTGGGACA
R:
GCCATAGTCGTTCCCACCAGA
Band lengths:
101-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]