RnoALTA0008651-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:57008680-57009750:-
Coord C1 exon
chr13:57009577-57009750
Coord A exon
NA
Coord C2 exon
chr13:57008680-57008862
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
ATACAGTATTTCTGTAACAGGCC
3' ss Score
4.98
Exon sequences
Seq C1 exon
AAAGAGAATGCAGCATTCCCCTGTTACACCAAGACTTAGTTGTTTTTCCCAGAGAAGTAAAATACAAAGTTGGAGATTCGTTGAGTTTCTCTTGCCGTTCAGGACACAGAGTTGGAGCAGATTTAGTGCAATGCTACCACTTTGGATGGTCCCCTAATTTCCCAACGTGTGAAG
Seq A exon
NA
Seq C2 exon
GCCAAGTAAAATCATGTGACCAACCTCTTGAAATCCCGAATGGGGAAATAAAGGGAACAAAAAAAGTTGAATACAGCCATGGTGACGTGGTGGAATATGATTGCAAACCTAGATTTCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGACGGGAAGTGGACAACCTTGCCGATATGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-21-27,21-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCACTTTGGATGGTCCC
R:
TGTTCCCTTTATTTCCCCATTCGG
Band lengths:
101-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]