RnoALTA0009024-6/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015999 | Cirbp
Description
cold inducible RNA binding protein [Source:RGD Symbol;Acc:620756]
Coordinates
chr7:12402982-12405022:-
Coord C1 exon
chr7:12404947-12405022
Coord A exon
chr7:12403075-12403173
Coord C2 exon
chr7:12402982-12403074
Length
99 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
AATACATTACTCTTTTTTAGAAA
3' ss Score
7.47
Exon sequences
Seq C1 exon
GCACTCGCGCGTTAGGAAGCTTGGGTGTGTGACGCGCTGTCTTCCCGCCCGCGTCAGGGACCTGCCCGACTCAGCG
Seq A exon
AAAGGCTAAGAATACGCTATCTGGCTTCAGTTTCTGGAGGGGTGGTGGTTAAGGCCAAGCAAGCATCTGTAGTGTGTGCACAGGCTGCCATGGCATCAG
Seq C2 exon
ATGAAGGCAAGCTTTTCGTGGGAGGTCTCAGCTTCGACACCAATGAGCAGGCGCTGGAGCAGGTCTTCTCCAAGTATGGGCAGATCTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015999-1-7,1-6,1-5,1-4,1-3,1-2-6/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCGCGCGTTAGGAAG
R:
TCCGAGATCTGCCCATACTTGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]