RnoALTA0009093-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34438427-34439999:+
Coord C1 exon
chr13:34438427-34438505
Coord A exon
chr13:34439474-34439895
Coord C2 exon
chr13:34439896-34439999
Length
422 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACCCACCGAGTCTCATTAGGGT
3' ss Score
0.56
Exon sequences
Seq C1 exon
GTGGTTCTCTTGGGCATGGACATCCTGTCGGCATTGGTGACTAGGCTGCAGGACCGGTTCAAGGCGCAAATCGGCACAG
Seq A exon
GGTTGCTCACAGAAGCATAGCTGAAGGATGTTTACAAGGTGGGTCCTTAGCCATAATGTATAATGAGAATGTCTCATTCTCCCCCCCCCACCCCCAGCAGTTAACTGCACATAAACCCTCAGGAGGGTGGGTCTTAGTGAGCCCTCCTATTGTAAGGCCTTTTTGTTTTTCCTTCCCTTCCTCCCCTCATTCCTTTCACACTGGGTACTATATAGTGTTGGCTGGCCTTGAACATTGCCTGCAAAGGATGACCTTAAACTCCTGATCCTCCTTCCTCCATGTCCCAAGTGCAGAGATTACCACAGTACTCACCCAGCCCTGGCTTTGGAATCACCCCCTTAGGCCAGCTGACTGCAGATCAACAGCGGGTGACCTCAGATCCAACCCAAGATCTATTCTGTCTATTTCCATCTTGGTTTCAG
Seq C2 exon
TGTTGCCAAGTCTAATAGACAGACTGGGAGATGCTAAGGACTCCGTGAGGGAGCAAGACCAAACTCTGCTGCTAAAGATCATGGATCAAGCTGCTAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376-7-9,7-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127832=Sec7_N=FE(24.8=100),PF123483=CLASP_N=FE(15.1=100)
A:
NA
C2:
PF127832=Sec7_N=FE(32.4=100),PF123483=CLASP_N=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTCTCTTGGGCATGGAC
R:
TGGGGATTAGCAGCTTGATCC
Band lengths:
182-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]