RnoALTA0009192-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000053638 | Clec12b
Description
C-type lectin domain family 12, member B [Source:RGD Symbol;Acc:1560487]
Coordinates
chr4:163146831-163149093:-
Coord C1 exon
chr4:163148995-163149093
Coord A exon
chr4:163146973-163147046
Coord C2 exon
chr4:163146831-163146972
Length
74 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
AGTCTTCTTATGTCTTCCAGTTT
3' ss Score
6.85
Exon sequences
Seq C1 exon
AATGCCCAGCTCAATCCCCACTTTGGCGAGGAGCTGCCTTGAGCTTGATGACCCTCTGCTTGATGCTGGTGACAGGACTTGTAACCTTGGCAACTATGT
Seq A exon
TTTTGCAGGTGTCTAATGATATTAACTCTGATTCAGAGAAGTTGAGTGAACTTCAGAAAATCATCCATCCACAG
Seq C2 exon
CAGGACAATCTGTCTGAATCACTGAACAACTCCAGAAAGGGTCTTACAGAGGAATCTCTCCAGTCCCAGATCTCTGCCCTCCTGGAGAGGCAGGGGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCATGCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053638-4-5,4-4,4-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(23.1=82.4)
A:
NA
C2:
PF083915=Ly49=FE(59.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGAGCTTGATGACCCTC
R:
GAGTTTGGTAGCCATCTGCCC
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]