RnoALTA0009204-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000059538 | Clec2g
Description
C-type lectin domain family 2, member G [Source:RGD Symbol;Acc:1563148]
Coordinates
chr4:162934195-162936698:+
Coord C1 exon
chr4:162934195-162934261
Coord A exon
NA
Coord C2 exon
chr4:162936282-162936698
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
GATGTTTGTTTTTCCAGAAGCTG
3' ss Score
1.81
Exon sequences
Seq C1 exon
ATGAGTGCCAAAAAGGCTTCCCAACCTATGCTCAATACCACAGGCAGCCTGCAGGAGGGAGAAATGG
Seq A exon
NA
Seq C2 exon
CTGTTCACATGGATCCCTGCAGTCTGATAGTCCTTCACATGCTTCAGTGGTGTGTCAAATACAAACAGTTGTCCTTTGTTTAAAAGAGATCATGTTCCAAGCACGGTTGATCTAAGACTTGTTATGGAGTCAGAAACTTGAAAGCAACTCAAAATACAACATCTGCTTTTACTTTGCAGAAGGTTTTAAAACAGCCAACGGAAACTTGTGGGTTAGATTAGCTCAAGCAGAAATAAGTTGGTGACAGTTGGAGCTATCAGATAAAAACAAAACAAAAAAAAAATTACGACTATGTGAACAGACTCTTAAGCTCTTAAAGTAAGCTGGAGGAAAGCTGGTTTTAGGGCTCACTCTAGAGCTTGCTGATAGCCCAAGACTGAGGAACATTTGGACAGAGGGAGAGATGATCAGGGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059538-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAATACCACAGGCAGC
R:
ACACACCACTGAAGCATGTGA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]