RnoALTA0009646-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14363689-14364719:+
Coord C1 exon
chr3:14363689-14363914
Coord A exon
chr3:14364519-14364636
Coord C2 exon
chr3:14364637-14364719
Length
118 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
TCACTCCCCTCCCAGAACAGCAG
3' ss Score
2.5
Exon sequences
Seq C1 exon
GTGTTTCAAAAACTCCAGAAAGAAAGAGAAAGTGAGGAGCAGAAGTTAGTGGCTAGCATAGTGTCGCTGGAGCAGCAGCAGGGACAGCTGGAGAGGGAGCTGATGGACCAGAAAAGCAAGCTGGAGTGGCTGCTCACAGACGTGTCGGCCGCTGAAGGACGCCTCAGGACCCTGCAGAAAGAGGAGCGGTGCACTGAGAGCCTGGAGAAGATGCTGTCCCAGGCCA
Seq A exon
CAGCTTTCAGAGCGGGAGCAGCAGCTGATGGAGAAGTCGGGTGACCTGCTGGCCCTGCAGAAAGAGGCCGATGGCATGAGGGCAGACTTCAGCCTACTGAGAAACCAGTTCTTAACAG
Seq C2 exon
AAAGGAAGAAGGCAGAGAAGCAGGTGGCTGGGCTGAAGGAGGCACTGAAGATCCAGCGGAGCCAGCTGGAGAAGAACCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-51-77,51-75,51-74,51-73-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCATAGTGTCGCTGGAGCA
R:
GAAGGTTCTTCTCCAGCTGGC
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]