RnoALTA0011001-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000031529 | Cyp2b12
Description
cytochrome P450, family 2, subfamily b, polypeptide 12 [Source:RGD Symbol;Acc:620088]
Coordinates
chr1:83513362-83513868:+
Coord C1 exon
chr1:83513362-83513511
Coord A exon
NA
Coord C2 exon
chr1:83513750-83513868
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCTTCCAATCCATCGCAGCAA
3' ss Score
6.95
Exon sequences
Seq C1 exon
GTGTGATCTTTGCCACTGGGGAACGTTGGAAGACCCTTCGGCGATTCTCTCTGGTCACCATGAAAGAATTCGGAATGGGAAAGCGGAGTGTAGATGAGAGGATAAAGGAGGAGGCCCAGTGTTTGGTGGAGGAGCTGAAGAAATACAAGG
Seq A exon
NA
Seq C2 exon
CAAACACCATCTGCTCCATTGTCTTTGGAGAGCGCTTTGACTACAAAGACCACCAGTTCCTGCATCTGCTGGATCTAGTCTATAAGACATCTGTCCTTATGGGCTCCTTGTCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031529-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTTTGGTGGAGGAGCTG
R:
TGGACAAGGAGCCCATAAGGA
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]