RnoALTA0011003-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000031529 | Cyp2b12
Description
cytochrome P450, family 2, subfamily b, polypeptide 12 [Source:RGD Symbol;Acc:620088]
Coordinates
chr1:83515522-83517899:+
Coord C1 exon
chr1:83515522-83515663
Coord A exon
chr1:83517427-83517711
Coord C2 exon
chr1:83517712-83517899
Length
285 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CTTGCCAATTTTTCCTCCAGCCT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GAGAAGTCCAACCATCACACAGAGTTCAATCACCAGAACCTTGTGATCTCTGTGCTCTCTCTCTTCTTTGCTGGCACCGAGACCACCAGCACCACGCTCCGTTGCACCTTCCTGATCATGCTCAAGTACCCCCACGTTGCAG
Seq A exon
CCTCACTCTGGATTGACAGTTGAAATGGCCCTTCGCTGAAAGTTTTCCTTTTCTCTCTTTTGCAAGCAAAGCTGTAACTTATTAAGAAGAGACTCTAGCATGTTCTACACATGAATGGAGAGAAAGGTCCTTGATAGAAGCACAAGTGTGTGCATCCAAGAAAGCCTTGTGTGTTTCTCAGCAGAAACTCTGAACTGTTCCTGGGTTATTGGACCCCAGAAAACAGGTTGCTATGCATTGCCTCTGAGAAAGGGGCACTGTCTATTGTCTCTCCTTTCTATGCAG
Seq C2 exon
AGAAAGTCCAAAAGGAGATTGATCAGGTGATTGGCTCACACCGGCTACCAACCCCTGATGATCGTACCAAAATGCCATATACTGATGCAGTCATCCATGAGATTCAGAGATTTGCAGATCTGACCCCGATTGGTCTACCACACAGAGTCACCAAAGACACCGTGTTCCGAGGGTACCTGCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031529-5-9,5-8,5-7-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAACCATCACACAGAGT
R:
GGAACACGGTGTCTTTGGTGA
Band lengths:
306-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]