RnoALTA0011004-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020775 | Cyp2b2
Description
cytochrome P450, family 2, subfamily b, polypeptide 2 [Source:RGD Symbol;Acc:2467]
Coordinates
chr1:83112711-83113474:+
Coord C1 exon
chr1:83112711-83112884
Coord A exon
NA
Coord C2 exon
chr1:83113333-83113474
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGCNNTNN
5' ss Score
0
3' ss Seq
TCTCTCCCACCTGCAACCAGGAG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTGTTTGAGTTCTTCTCTGGGTTCCTGAAATACTTTCCTGGTGCCCACAGACAAATCTCCAAAAACCTCCAGGAAATCCTCGATTACATTGGCCATATTGTGGAGAAGCACAGGGCCACCTTAGACCCCAGCGCTCCACGAGACTTCATCGACACTTACCTTCTGCGCATGGAG
Seq A exon
NA
Seq C2 exon
GAGAAGTCGAACCACCACACAGAGTTCCATCATGAGAACCTCATGATCTCCCTGCTCTCTCTCTTCTTTGCTGGCACTGAGACCGGCAGCACCACACTCCGCTATGGTTTCCTGCTCATGCTCAAGTACCCCCATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020775-5-10,5-9,5-8-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTACCTTCTGCGCATGG
R:
GGTCTCAGTGCCAGCAAAGAA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]