RnoALTA0011052-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83626639-83627577:+
Coord C1 exon
chr1:83626639-83626818
Coord A exon
chr1:83627395-83627420
Coord C2 exon
chr1:83627421-83627577
Length
26 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
CAATTTACTCCTTCCTTCAGTTA
3' ss Score
7.34
Exon sequences
Seq C1 exon
ATGGCACTGGGAGGGGCCTTCAGCATCTTTATGACGCTCTGCTTGTCTTGCCTGCTCATCCTGATAGCTTGGAAGCGAACCAGCAGGGGAGGAAAGCTGCCTCCCGGCCCCACACCAATACCATTTTTGGGGAACCTGTTACAAGTACGCATTGATGCCACATTTCAGTCCTTTCTGAAG
Seq A exon
TTATCTTCCTTCACTCCCAGCTCCAG
Seq C2 exon
AAAAAGTATGGCTCTGTGTTCACCGTATACTTTGGCCCAAGGCCAGTGGTTATCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGTCGTGGTGAAATGCCTACACTAGAGAAGAACTTTCAAGGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCACACCAATACCATTT
R:
GCCTTGGGCCAAAGTATACGG
Band lengths:
118-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]