RnoALTA0011103-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000042496 | Cyp4f5
Description
cytochrome P450, family 4, subfamily f, polypeptide 5 [Source:RGD Symbol;Acc:708364]
Coordinates
chr7:14559878-14560464:+
Coord C1 exon
chr7:14559878-14559946
Coord A exon
chr7:14560263-14560364
Coord C2 exon
chr7:14560365-14560464
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TCCTGTGTCTGTCTCCTCAGCAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GCAGCAGATAAATGCGTTTTTGCAGGAGTGGGGAGAAGGTCTTAGAGGACAGGCTGCTCCTGAGATAAG
Seq A exon
CAGGATGCCGTGGCTAACTGTGTCTGGGCTGGACCTAGGCTCTGTGGTGACCTCGACATGGCATCTTCTGCTGCTTGGAGCCGCTTCTTGGATTTTGGCCAG
Seq C2 exon
AATTCTTGCCTGGACTTACTCATTCTGTGAGAACTGCTCCCGCCTCAGATGTTTCCCTCAGTCCCCTAAAAGAAACTGGTTTTTGGGCCACTTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042496-13-12,13-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGCAGGAGTGGGGAGA
R:
CCAAGTGGCCCAAAAACCAGT
Band lengths:
149-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]