RnoALTA0011997-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13102100-13103120:+
Coord C1 exon
chr20:13102100-13102236
Coord A exon
NA
Coord C2 exon
chr20:13103040-13103120
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CCTCTTCCCTGTTCTGGCAGACC
3' ss Score
9.7
Exon sequences
Seq C1 exon
CTAGTGTCTGTGTCGTGAAGGTAGACGGTGTCCCTTACCTCTGTAAAACTGATGAAATCGGAGAGATCTGTGTCAGTTCTGTGGCCACTGGGACAGCATATTACGGGCTGCTTGGCATCACAAAGAATGTCTTTGAG
Seq A exon
NA
Seq C2 exon
ACCGTCCCGGTCACTGCGGATGGAGTCCCTGTCTCTGACCGGCCTTTCACCCGGACAGGTCTTCTGGGGTTTATTGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-26-28,26-27,26-26-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGTTCTGTGGCCACTG
R:
AGAAGACCTGTCCGGGTGAAA
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]