RnoALTA0011997-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13102100-13103120:+
Coord C1 exon
chr20:13102100-13102236
Coord A exon
chr20:13102994-13103039
Coord C2 exon
chr20:13103040-13103120
Length
46 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CTGCCTTGTCTTTCTAGTAGTCA
3' ss Score
4.26
Exon sequences
Seq C1 exon
CTAGTGTCTGTGTCGTGAAGGTAGACGGTGTCCCTTACCTCTGTAAAACTGATGAAATCGGAGAGATCTGTGTCAGTTCTGTGGCCACTGGGACAGCATATTACGGGCTGCTTGGCATCACAAAGAATGTCTTTGAG
Seq A exon
TCAGTGAGTTGTCTGCTGCCTGACATCCTCTTCCCTGTTCTGGCAG
Seq C2 exon
ACCGTCCCGGTCACTGCGGATGGAGTCCCTGTCTCTGACCGGCCTTTCACCCGGACAGGTCTTCTGGGGTTTATTGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-26-28,26-27,26-26-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGTTCTGTGGCCACTG
R:
AGAAGACCTGTCCGGGTGAAA
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]