RnoALTA0012458-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22537365-22538421:+
Coord C1 exon
chr8:22537365-22537597
Coord A exon
NA
Coord C2 exon
chr8:22538358-22538421
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
AGCCTTTCCTCCCTCTACAGCCC
3' ss Score
9.46
Exon sequences
Seq C1 exon
ACAAAGGCCTTCATCCACCATGAGCTGCTAGCCTACCTGTACTCATCAGCAGACCAGAGCAGCCTCATGGAGGAGTCAGCTGAGCAGGCTCAGCGGCGGGACGATATGCTGCGCATGTACCATGCACTCAAGGAAGCGCTCAACATCATTGGGGACATCAGCACCAGCACCGTGTCCACGCCTGTGCCCCCACCTGTCGATGATACTTGGCTCCAGAACACCAGCAGCCACAG
Seq A exon
NA
Seq C2 exon
CCCCACTCCACAGCGCAGACCTGTGTCCAGTGTGCACCCGCCGGGCCGCCCACCCGCAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649-41-37,41-36-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=66.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCAACATCATTGGGGACA
R:
GACACAGGTCTGCGCTGTG
Band lengths:
124-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]