RnoALTA0012788-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37062187-37064232:-
Coord C1 exon
chr11:37064115-37064232
Coord A exon
chr11:37062351-37062354
Coord C2 exon
chr11:37062187-37062350
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACC
5' ss Score
6.66
3' ss Seq
TGCATTTTTCTTCCTGTGAGGCA
3' ss Score
0.61
Exon sequences
Seq C1 exon
CTCCTGCACGGATCCTCACGTTCAGTGGGACAGTGACTACTCCGTGGATGAAGGACATCGTCTTGCCGTGTAAAGCTGTTGGAGACCCATCACCTGCCGTAAAATGGATGAAGGATAG
Seq A exon
GCAG
Seq C2 exon
TAACGGGACGCCCAGCCTGGTGACGATTGATGGCCGCAGAAGCATCTTCAGCAATGGGAGTTTCGTTATTCGCACGGTGAAGGCCGAGGACTCTGGCTACTACAGCTGTGTTGCCAATAACAACTGGGGATCAGATGAGATCATATTAAATTTGCAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-36-28,36-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(40.0=90.0)
A:
NA
C2:
PF0767911=I-set=PD(58.9=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCTTGCCGTGTAAAGCTG
R:
CATCAATCGTCACCAGGCTGG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]