RnoALTA0012800-5/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27293554-27294998:-
Coord C1 exon
chr17:27294900-27294998
Coord A exon
chr17:27293635-27294029
Coord C2 exon
chr17:27293554-27293634
Length
395 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
GAAAAACACCAAGATTGAAGTTT
3' ss Score
-9.97
Exon sequences
Seq C1 exon
GCTGCGGACATCCATGCAAGGTACATCGAGCTACTTACAAGGTCTGGAGACTACTACAGATTCTTAAGTGAGATGCTGAAGAGCCTAGAAGATCTGAAG
Seq A exon
TTTTGGAAGAGGAGCTAAGACTGGCCCGGGATGCCAACTCGGAAAATTGCAATAAGAATAAGTTCCTAGATCAGAACCTGCAGAAATACCAGGCCGAGTGTTCCCAGTTCAAAGCAAAGCTTGTGAGCCTGGAGGAGCTGAAGAGACAAGCTGAGCTGGATGGGAAGTCAGCCAAGCAAAACCTAGACAAGTGCTACGGTCAGATCAAAGAGCTCAATGAAAAGATCACCCGGCTGACCTATGAGATCGAAGACGAGAAGCGCAGGAGAAAGACCGTGGAGGACAGGTTCGACCAACAGAAGAATGACTATGATCAGCTGCAGAAGGCAAGGCAGTGTGAAAAGGAGAGCCTTGGCTGGCAGAAGCTGGAGTCTGAGAAAGCCATCAAGGAGAAG
Seq C2 exon
GAGTACGAGATAGAGAGGTTGAGGGTTCTGCTGCAGGAAGAGGGCGCCCGGAAGAGAGAATATGAAAATGAGCTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-26-30,26-29,26-27,26-26,26-25,26-24-5/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.482
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]