RnoALTA0013377-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2060098-2123820:-
Coord C1 exon
chr3:2123776-2123820
Coord A exon
chr3:2060162-2060164
Coord C2 exon
chr3:2060098-2060161
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTGTTTTCTTCCCCTCCAGCAG
3' ss Score
9.74
Exon sequences
Seq C1 exon
GGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCGGATGCTGAG
Seq A exon
CAG
Seq C2 exon
GCAGTTCTGGCCAAGCAAGAGACCAAGCAGGATTGCTGCATGAAAACTGAACTGCTAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242-0-6,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]